Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0575 ATGGAGATATCATTGTTAAAGATGCTTGTTAATGGCATATCCTCGTTTCTGAATTTATCGTTTTCTGGAAACATCAACTCGGAACCCATCTCAAAGTATTACCAAAAGGCAGAGGAGATACTTAGGCTGTTGAAGCCAATTATTGATGCAATTGCTCATTCTGAGTTAGCTTCTGATGAAGTGCTTAGTAAGATATTTGAAGAACTRGGTCATGCAYTTGATGAATTAAGGGAGCATATTGAGAACTGGCACCTGTTGTCCAGCAAAGTTTACTTTGCTATGCAAGTTGAACCCTTGATATCTAGGATAAGGACTTTGGGGCTCAATATTTTCCAGCAGCTGAAGGTTTCTCAGCAATGTCTCCCRGATGAATTGAGTTCTGATCATCTGGAGCATTGTGTTCAGAAACTTAAGCATTTGGGACATGAAGAAGTATCAGCAGTCATTAAGGAAGCTATTACTGAACAACGGGAAGGTTTAGGACCCAGTTCAGAGGTCCTGGCAAAAATTGCTGATAGCCTAGGTCTAAAGTCTAATCAGGAGGTTCTGATTGAGGCTGTGGCCCTTGAAAAATTGAAGGAGAATGCTGAGCAAACTGAAAAGACTGCAGAAGCTGAATATATTGATCAAATGATRGCTGTTGTAACACGTATGCATGAGCGGCTTAGTATGCTTAAGCAAGCTGAGAGTAGCAGCCCAGTTCCAGTACCTGCTGATTTTTGTTGTCCTCTCTCTTTGGAGTTGATGACTGATCCAGTGATTGTGGCATCAGGACAAACCTATGAGCGGGCTTTCATTAGGAACTGGATTGATCTTGGACTTACTGTTTGTCCGAAGACTCGGCAGGCACTAGCTCATACCAACCTAATACCTAACTACACTGTAAAAGCACTAATTGCAACTTGGTGTGAGTCAAACAATGTGAAACTGGTTGAGCCCTCGAAGTCCACTAGTTTAAATCAAGCATCTGTCATTCAGGGGTATATGGAGTCTGGTACAACCAGGGACTCACCTGTCTTTTCTCATTCCAGGGGCAACCAGCCATCCTCACCTGAGTCGGTGCGTTCTCATTCTTTTAGTTCACCAGGTAATAACATAACTTCTGCTGGAATRCAGCGAGAGGGAACATCACCATTGCATCCCCGTTCAATTTCTGAAGGTTCCTTAAGTGGTATGGTTAATGGGCAGCATATGGATCTTGCTGGAGCAGGTTTAGATGACAGGTCTGCTAGCTCAGATGAAAGCAGTGTGGATTCAGTTGGCCAACCCTCAATGTCGCCATCTAAAAGGGAATCGTCTGYTGCCTTTATCCCTGACCAAGCCCAAGCCCATGTTAGAACTATTTCTTACTCCAGTGCACTTTCTAGTGGAAATTTCCCCCAAGAAACACCAGGTGATGATAATAGTTCTCCTCAGTTGTCAAGCAGTCCAGCATACAGTAGAGATGTTTCKGGTGAATTAAATCCCGGCCCAGATTCTGCTAGTGCTGCTACRGTTCCATCTTCACATAGAGAACCAGAGTTCCCACCTCGATCGGAGACAAGGTCCCGAACATCRTTGTGGCAYCGACCATCCCAGAGGCTTGTTCCTAGGATGGCATCCTCTCCTGCTGCTGAAACTAGAGCTGATCTTTCTGCTATTGAATCCCAGGTTCGGAAGTTGGTTGAGGGCTTGAAGAGCACCAATATTGATACTCYGAGAGAGGCAACAGTAGAAATTCGGCTTCTTGCCAAGCATAATATGGATAATCGAATTGCAATTGCAAACTGTGGAGCCATTACCATATTAGTTGAGTTACTCAGATCACCAGATACAAGGATCCAGGAAAATGCTGTTACTGCACTTCTGAACTTATCAATCAATGACAATAACAAAAGTGCAATAGCAAATGCTGGTGCAATTGAACCTCTGATTCATGTGCTGAAGACAGGGAGCCCAGAAGCCAAGGAGAATTCTGCTGCCACTCTATTCAGCTTATCAGTGATTGAGGAAAACAAAATTAGCATTGGTAGGTCGGGGGCTATTGGACCGTTGGTTGATCTATTAGGGAATGGAACCCCTAGGGGTAAGAAAGACGCAGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGAATCGAATTGTGCAAGCTGGTGCCGTGAAGCACCTTGTGGAGTTAATGGACCCTGCTGCCGGAATGGTTGATAAGGCAGTGGCAGTCTTAGCAAATCTGGCCACAATTCAAGAAGGAAGAGTTGCTATTGGTCAGGAAGGTGGGATTCCTGTTTTGGTCGAGGTTGTCGAGTTGGGCTCTGCAAGAGGAAAAGAGAATGCAGCAGCAGCTCTTCTGCATCTATGCTTACATAGCAACAGATTCTTAAGCATGGTGCTTCAGGAAGGAGCTGTCCCACCATTAGTCGCYTTATCACAGTCAGGTACRSCGAGGGCCAAAGAAAAGGCCCAGGCTCTCCTCAATCAATTTAGAAGTCAGAGACATAATGCGGGGAGGGGCTGA 2502 0.4436 MEISLLKMLVNGISSFLNLSFSGNINSEPISKYYQKAEEILRLLKPIIDAIAHSELASDEVLSKIFEELGHAXDELREHIENWHLLSSKVYFAMQVEPLISRIRTLGLNIFQQLKVSQQCLPDELSSDHLEHCVQKLKHLGHEEVSAVIKEAITEQREGLGPSSEVLAKIADSLGLKSNQEVLIEAVALEKLKENAEQTEKTAEAEYIDQMXAVVTRMHERLSMLKQAESSSPVPVPADFCCPLSLELMTDPVIVASGQTYERAFIRNWIDLGLTVCPKTRQALAHTNLIPNYTVKALIATWCESNNVKLVEPSKSTSLNQASVIQGYMESGTTRDSPVFSHSRGNQPSSPESVRSHSFSSPGNNITSAGXQREGTSPLHPRSISEGSLSGMVNGQHMDLAGAGLDDRSASSDESSVDSVGQPSMSPSKRESSXAFIPDQAQAHVRTISYSSALSSGNFPQETPGDDNSSPQLSSSPAYSRDVSGELNPGPDSASAATVPSSHREPEFPPRSETRSRTSLWHRPSQRLVPRMASSPAAETRADLSAIESQVRKLVEGLKSTNIDTXREATVEIRLLAKHNMDNRIAIANCGAITILVELLRSPDTRIQENAVTALLNLSINDNNKSAIANAGAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKISIGRSGAIGPLVDLLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIQEGRVAIGQEGGIPVLVEVVELGSARGKENAAAALLHLCLHSNRFLSMVLQEGAVPPLVALSQSGTXRAKEKAQALLNQFRSQRHNAGRG* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0575 833 MobiDBLite consensus disorder prediction 414 435 - -
Amo01g0575 833 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Amo01g0575 833 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Amo01g0575 833 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 673 715 IPR000225 GO:0005515
Amo01g0575 833 Pfam Armadillo/beta-catenin-like repeat 582 619 IPR000225 GO:0005515
Amo01g0575 833 Pfam Armadillo/beta-catenin-like repeat 621 660 IPR000225 GO:0005515
Amo01g0575 833 Pfam Armadillo/beta-catenin-like repeat 664 701 IPR000225 GO:0005515
Amo01g0575 833 MobiDBLite consensus disorder prediction 322 392 - -
Amo01g0575 833 MobiDBLite consensus disorder prediction 506 520 - -
Amo01g0575 833 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 317 IPR013083 -
Amo01g0575 833 SUPERFAMILY ARM repeat 550 823 IPR016024 -
Amo01g0575 833 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Amo01g0575 833 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 714 755 IPR000225 GO:0005515
Amo01g0575 833 Coils Coil 179 209 - -
Amo01g0575 833 PANTHER U BOX DOMAIN-CONTAINING 7 829 - -
Amo01g0575 833 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 591 633 IPR000225 GO:0005515
Amo01g0575 833 SUPERFAMILY RING/U-box 223 312 - -
Amo01g0575 833 MobiDBLite consensus disorder prediction 444 482 - -
Amo01g0575 833 CDD RING-Ubox_PUB 240 282 IPR045210 -
Amo01g0575 833 MobiDBLite consensus disorder prediction 322 526 - -
Amo01g0575 833 Gene3D - 527 830 IPR011989 -
Amo01g0575 833 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 829 - -
Amo01g0575 833 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 632 674 IPR000225 GO:0005515
Amo01g0575 833 SMART arm_5 703 742 IPR000225 GO:0005515
Amo01g0575 833 SMART arm_5 662 702 IPR000225 GO:0005515
Amo01g0575 833 SMART arm_5 580 620 IPR000225 GO:0005515
Amo01g0575 833 SMART arm_5 621 661 IPR000225 GO:0005515
Amo01g0575 833 SMART arm_5 743 783 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0575 Amo-Chr1 8422051 8430223 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0575 196 833 U-box Gene Family AT2G23140 61.085 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0575 - - gmx:100813786 1302.35