Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0559 ATGGCAAATAACAATGCAACTACACTCTCACTTGAGATGAAGGATGTTGTGATCATTAAACCTTCCAAACCAACACCTTCTTGTGTTCTTCCTCTATCAAGCATTGACAACAATCCTGAGCTCAACGTTCTCTGTCACATCATTTATGCATACCAAGCAAATCTTGATGACCCAAAAGGCCAATTACTATTAGATCCTTGTCATGTGATAAAACAAGGCATTTCAAAGGCTTTGGTTTACTATTACCCTCTTGCAGGTAAGATAGTAACAAATAATGGTGGTGATGGAAGACTTGGAATCAAGTGCAATAATAATGCTGATGATGGAGTTCCATTCTTGGAGGCAAATGCTAATTGTGAACTCTCTTCTCTTCACTATCTTGAAGGGATTGATGTTCCAACAGCACAGAAATTGGTGTTTGATTATGACAAACCTTCTCTTCATCATGATCAAACTAGTCAACATCCCTTGGTTTTCAAGGTAACAAAGTTTCTTTGTGGCGGTTTCACAATTGGAATGGGATTGTCACATGCTGTTTGTGACGGTTTTGGTGCGTCGCAATTCTTTAGAGCTGTTGCTGAACTTGCAAGTGGGAAAAGTGAGCCTTCTGTGAAACCTGTGTGGGAGAGGGAGAGATTAATCGGAACAGTTCTCAAGCAACCACTGAAATTTCCGATAGATAAAAGTTCAATGGCAGTTTCACCATTTTGGCCATCTAATGATCTTTCACATGAATGCTTTCACTTCAAGGGTGAGAGCATAAAGAGACTCAAAATGGAGTTGATGAAGGAAAATGGTGATGATAATAATGGTAAGGAAAGCTTCACAACACTTGAAGCACTTGGTGCCTATGTTTGGAGATCAAAGGCAAGAGCTATGGAATTGAGTAGTGATGGGAAGACTTTGTTGTGTTTAGCAGTTGGTGTGAGGCACCTATTGGATCCACCTTTGCCAGAAGGGTATTATGGGAATGCTTTTGTGAATTCAAATGTGGTCTTAACAGTGAAAGAACTTAATAAGAAACCACTCTCAGAGGTTCTGAAGCTCATTAAGGAAAGCAAAAAACAACCTTGTAATATGGAATACATAAGAAGCAACATCAACATGTTGGAGACAATGAGGAAATGTAACATTAAGATTGGAGGTTTAGGTGCATCAATGGTATTAACAGATTGGAGGCAATTGGAATTGTTGGATGAAGTGGATTTTGGATGGAAAGCTTCGGTTAATATGATACCTCTCCCTTGGAACATGTTTGGCTATGTGGATTTGACCCTTTTCTTGCCTCCTAGTAACTTTGATCCTTCAATGAAAGGAGGTGTTAGAGTTTATGTTTCCCTTCCCAAAGCTTCCATGCCCAAGTTCAAGGAGGAGATGGAGGCTCTCAAGATTATGAAAGATGAGGAAAGCAAGGTTGTCAAACTCCCGAATTTAGTGAATTTACAAGTTTAA 1452 0.3946 MANNNATTLSLEMKDVVIIKPSKPTPSCVLPLSSIDNNPELNVLCHIIYAYQANLDDPKGQLLLDPCHVIKQGISKALVYYYPLAGKIVTNNGGDGRLGIKCNNNADDGVPFLEANANCELSSLHYLEGIDVPTAQKLVFDYDKPSLHHDQTSQHPLVFKVTKFLCGGFTIGMGLSHAVCDGFGASQFFRAVAELASGKSEPSVKPVWERERLIGTVLKQPLKFPIDKSSMAVSPFWPSNDLSHECFHFKGESIKRLKMELMKENGDDNNGKESFTTLEALGAYVWRSKARAMELSSDGKTLLCLAVGVRHLLDPPLPEGYYGNAFVNSNVVLTVKELNKKPLSEVLKLIKESKKQPCNMEYIRSNINMLETMRKCNIKIGGLGASMVLTDWRQLELLDEVDFGWKASVNMIPLPWNMFGYVDLTLFLPPSNFDPSMKGGVRVYVSLPKASMPKFKEEMEALKIMKDEESKVVKLPNLVNLQV* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0559 483 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 5 463 - -
Amo01g0559 483 Gene3D - 6 221 IPR023213 -
Amo01g0559 483 PANTHER ACYL TRANSFERASE 4 5 463 - -
Amo01g0559 483 Gene3D - 238 459 IPR023213 -
Amo01g0559 483 Pfam Transferase family 10 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0559 Amo-Chr1 8192908 8195107 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0559 9 457 Monolignol Biosynthesis Gene Families AT5G48930 27.234 3.25e-33 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0559 K20240 - gmx:100801843 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0109 11 1476221 1478529 Amo01g0559 01 8192908 8195107 hybridization