Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0543 ATGAGAGTTTGGCCTGTCCTTCTCATCTTGCTGTTGCAGTTTGTTGAACCCTCACATGGCCAGACAAAGAGCCAACAGAACAACACAGGGTTCCAGTGCAGTGGAAGAAGCTATCCATGCCAGGCCTATGCTTTCTACAGAGCTCAGAGTCAGTTTCTTGACCTAGCTTCCATTGGAGACCTCTTCCAAGTCAGCCGTCTCATGATTGCAAACCCAAGCAACATATCCTCTGATTCAGTTTCCTCTCCTCTAATCCTAAACCAGCAACTCTTTATTCCCTTAACATGTTCCTGCAACTCCATCAACACCACCTTTGGCTCCATCTCTTATGCTAACATCTCCTACACCATCAAACCCAACGATACCTTCTACTTAGTCTCCACCAACAAGTTTGAGAACCTCACTACCTACCCTTCTGTTGAGGTTGTTAACCCAAACCTTGTAGCAACCAACCTCCAAATTGGGGACAATGCTATATTCCCTGTCTTCTGCAAGTGCCCCGACAAGAACACAACTGTGTCCAACACAAGAGCCAATTACATGATCTCCTATGTTGTCCAACCGTCCGACAACCTATCTTCGATTGCTTCCAGGTTTGGATCTCAGCAGAAGGCCATCACTGATGTCAACGGGAACAAATTCAACGTCTATGATACCATATTCGTCCCGGTGACGAAGCTGCCGGTTCTGTCACAGCCGAATACAAGCACTGCTGCTGCTCCTTCTCCGACTCCGGCCGGCAGCTCTGATGACAGGGCAGGCACCGTGAGAGGGCTGGCAATTGGATTGGGGATTGCTGGTTTGCTGCTAATGGTGGTGTGTGCGGTGTGGATGTATAGGGAGAGTGTGTTGAAGGGCAGGATGTGGGCGGGCAGGGACGAGGAGGAGCAGAGGCAGAAGGAAGGCAGGGTGTTTTCGGGAGGGAGAGATGGGAAAGTGAGTAAACCGATGGATGTGAAGCTGATGGCCAATGTGTCTGACTGCTTGGACAAGTACAGAGTATTTGGAATTGAGGAACTTGTAGAAGCCACTGATGCCTTCAGTGACAGTTGCCTCATTCAAGGTTCTGTTTACAAAGGTACTATTGATGGAGAAACCTATGCAATCAAGAAGATGAAGTGGAATGCCTATGAGGAGCTCAAGATCTTACAGAAGGTTAACCATGGGAATCTGGTGAAGTTAGAAGGGTTTTGCATAGATTCTGAAGAAGGGAATTGCTATCTAGTTTATGAGTACGTGGAGAATGGATCTTTGAACTGGTGGCTGCACGAAGAGGAAGGGAAGAATAAGGAGAAGCTAAACTGGAAGACAAGGGTGAGAATAGGCATAGACATAGCAAATGGTCTTCAATACATCCACGAGCACACAAGGCCAAGAGTAGTGCACAAAGACATAAAGAGCAGCAACATTCTGTTGGACTCAAACATGAGAGCCAAGATTGCCAACTTCGGGCTTGCCAAGTCAGGAATGAATGCCATTACAATGCACATTGTGGGAACTCAGGGCTACATTGCTCCCGAGTATCTGGCCGATGGCGTCGTCTCCACCAAGATGGATGTCTTCTCTTTCGGGGTGGTGCTCCTGGAGCTCATCTCTGGAAGGGAAGCCATCGACGAGGAGGGGAATCTACTGTGGATGAGTGCTATGAAGACCTTTGAAGGGGTAAGTAGTGATCAAGAGAAGGGTAGGAGGGTGAGGGAGTGGATGGACAAGGCAATCTTGAGGGACACAATATCTATGGATAGTTTGTTGGGAGTTTTGGGGATTGCTATTGCTTGTTTGCATAAGGAGCCTTCAAAGAGGCCTAGCATAGTGGATGTTGTCTATGCTCTCTGCAAGAGTGATGATGCAGGGTTTGAAACCTCTGAGGATGGGATTGGATCCCCAAAGGTCACTGCTAGGTGA 1905 0.4814 MRVWPVLLILLLQFVEPSHGQTKSQQNNTGFQCSGRSYPCQAYAFYRAQSQFLDLASIGDLFQVSRLMIANPSNISSDSVSSPLILNQQLFIPLTCSCNSINTTFGSISYANISYTIKPNDTFYLVSTNKFENLTTYPSVEVVNPNLVATNLQIGDNAIFPVFCKCPDKNTTVSNTRANYMISYVVQPSDNLSSIASRFGSQQKAITDVNGNKFNVYDTIFVPVTKLPVLSQPNTSTAAAPSPTPAGSSDDRAGTVRGLAIGLGIAGLLLMVVCAVWMYRESVLKGRMWAGRDEEEQRQKEGRVFSGGRDGKVSKPMDVKLMANVSDCLDKYRVFGIEELVEATDAFSDSCLIQGSVYKGTIDGETYAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIDSEEGNCYLVYEYVENGSLNWWLHEEEGKNKEKLNWKTRVRIGIDIANGLQYIHEHTRPRVVHKDIKSSNILLDSNMRAKIANFGLAKSGMNAITMHIVGTQGYIAPEYLADGVVSTKMDVFSFGVVLLELISGREAIDEEGNLLWMSAMKTFEGVSSDQEKGRRVREWMDKAILRDTISMDSLLGVLGIAIACLHKEPSKRPSIVDVVYALCKSDDAGFETSEDGIGSPKVTAR* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0543 634 Pfam Protein kinase domain 355 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0543 634 Gene3D LysM domain 168 234 IPR036779 -
Amo01g0543 634 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 19 632 - -
Amo01g0543 634 PANTHER - 19 632 - -
Amo01g0543 634 SMART serkin_6 347 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0543 634 CDD LysM 182 222 IPR018392 -
Amo01g0543 634 SUPERFAMILY Protein kinase-like (PK-like) 335 611 IPR011009 -
Amo01g0543 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Amo01g0543 634 Gene3D Transferase(Phosphotransferase) domain 1 413 624 - -
Amo01g0543 634 SMART LysM_2 114 161 IPR018392 -
Amo01g0543 634 SMART LysM_2 183 223 IPR018392 -
Amo01g0543 634 Gene3D Phosphorylase Kinase; domain 1 317 412 - -
Amo01g0543 634 ProSiteProfiles LysM domain profile. 182 229 IPR018392 -
Amo01g0543 634 ProSiteProfiles Protein kinase domain profile. 299 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0543 634 Pfam LysM domain 184 221 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0543 Amo-Chr1 8028887 8031966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0543 30 613 Receptor kinase-like Gene Family AT2G23770 31.780 6.15e-81 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Amo01g0543 Pkinase 2.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0543 - - lang:109352405 893.649