Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0539 ATGGCCACAGACGCAAAAACACCAACACCAGCAGCGAAATTTCAGAACGCAGAGTTTCGGGAATTAACGGCGCCGTTAACCTCCCAAGACGGCCTCCGTTTCTGGCAGCTAATGATCTCCGGTTCCGTCGCTGGCTCCGTCGAACACATGGCCATGTTCCCCGTCGACACTGTCAAGACCCACATGCAAGCCCTAGGCACCTGTCCGCTCAAACGAAACGTCACCGTTTCGCAAGCCCTAAGAACCATCATCACGTCGAACGGAGGGCCCATCGCTCTCTACCGCGGAATCGGCGCAATGGGCCTGGGCGCAGGTCCGGCCCATGCCGTCTACTTCTCCTTCTATGAAACCTGCAAGACCTTCTTCTCGCGCGGGAACCCTAACAATTCATTGGCGCACGCTGTTTCCGGTGTATGCGCCACTATTGTGAGCGATGCAGTGTTCACGCCGATGGACATGGTGAAGCAGAGGCTTCAGCTGAGTGGTGCGAATGGTTATCGTGGTGTCTGGGACTGTGTGAAGAGGGTGATGAGTGAGGAAGGGTTTGGTGCTTTCTATGCTTCGTATAGGACCACTGTGTTGATGAATGCTCCTTTTACCGCGGTCCATTTCGTTACTTATGAGGCTGCCAAACGCGGCCTTATTGAGGTGGCGACGCCGGAGAGCGCCGAGGACGAACGGTTGGTTGTCCATGCGACTGCTGGTGCCGCTGCCGGTGCTTTGGCCGCAGCGGTTACTACTCCACTTGATGTTGTTAAAACTCAGTTACAGTGTCAGGGTGTCTGTGGATGCGATAGGTTGAAAATGGTTCAATTGCAGATGTTTTAA 828 0.5459 MATDAKTPTPAAKFQNAEFRELTAPLTSQDGLRFWQLMISGSVAGSVEHMAMFPVDTVKTHMQALGTCPLKRNVTVSQALRTIITSNGGPIALYRGIGAMGLGAGPAHAVYFSFYETCKTFFSRGNPNNSLAHAVSGVCATIVSDAVFTPMDMVKQRLQLSGANGYRGVWDCVKRVMSEEGFGAFYASYRTTVLMNAPFTAVHFVTYEAAKRGLIEVATPESAEDERLVVHATAGAAAGALAAAVTTPLDVVKTQLQCQGVCGCDRLKMVQLQMF* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0539 275 SUPERFAMILY Mitochondrial carrier 31 262 IPR023395 -
Amo01g0539 275 PANTHER MITOCHONDRIAL CARRIER PROTEIN, EXPRESSED 4 269 - -
Amo01g0539 275 PRINTS Mitochondrial carrier protein signature 186 204 IPR002067 GO:0055085
Amo01g0539 275 PRINTS Mitochondrial carrier protein signature 37 50 IPR002067 GO:0055085
Amo01g0539 275 PRINTS Mitochondrial carrier protein signature 143 161 IPR002067 GO:0055085
Amo01g0539 275 PRINTS Mitochondrial carrier protein signature 50 64 IPR002067 GO:0055085
Amo01g0539 275 PRINTS Mitochondrial carrier protein signature 235 257 IPR002067 GO:0055085
Amo01g0539 275 PRINTS Mitochondrial carrier protein signature 96 116 IPR002067 GO:0055085
Amo01g0539 275 PANTHER MITOFERRIN-1-RELATED 4 269 - -
Amo01g0539 275 Gene3D Mitochondrial carrier domain 220 268 IPR023395 -
Amo01g0539 275 Gene3D Mitochondrial carrier domain 11 219 IPR023395 -
Amo01g0539 275 ProSiteProfiles Solute carrier (Solcar) repeat profile. 226 275 IPR018108 -
Amo01g0539 275 ProSiteProfiles Solute carrier (Solcar) repeat profile. 128 213 IPR018108 -
Amo01g0539 275 Pfam Mitochondrial carrier protein 227 261 IPR018108 -
Amo01g0539 275 Pfam Mitochondrial carrier protein 32 124 IPR018108 -
Amo01g0539 275 Pfam Mitochondrial carrier protein 129 215 IPR018108 -
Amo01g0539 275 ProSiteProfiles Solute carrier (Solcar) repeat profile. 32 121 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0539 Amo-Chr1 7957901 7961994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0539 1 267 Chloroplast and Mitochondria Gene Families AT1G07030 69.485 6.09e-124 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0539 K15113 - gmx:100802640 391.349