Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0527 ATGATTCGGGTCCATGCCGGTTTTTCAAACAGGGTCGGGTCGAACGCCCCTTTCAACCCAGCCCAACTCCCCGACTCATCCTCTTCTCTCCATTCTTCCAACTATGCCAGAGTCCCCGCCGACGGCATTGTTGCTCCGTTATCCACATTTCCTTCTACATCGTTCAACTCCTGCGTCGCCACCCGCGTCTCTGCCCTCTCCCTCACGCACCTCTACCAAGTTCCAAAACCTCATCGCGCCGCCGTTCGTCTCACCCTAGCCGCCCGTCGCGCTGCCCTCCTGTCTCACCGTGGTCGTTCGGTAATTCTCTTGCCCGTCATCCGTCCGTCGTGTGCGTCTACAGCTCGCCAGTGTTCGTCGCCAGCTCGCCAGTGTTTGTCTCGTCGTCCGTCGCTCTCCCTCAAGCCTCTGCTCACTGCCCTCGCCGAAGCCCCCACCACTATCACCGCCAGCGGTTGCCATCGTTGCCTCTCGAAGGTCTGCTCGGAGCTGTTGGTGTCTCTGTTTTTGTCCTCGTCGTCAAGCCTCTGTCTTCGAGCCCCTTCTCTCTCTGTCCAAGCATACTCCCTTCCTCCCTCGCCGCCAGTAAGAAAAGCTGCTTCAATTTATGTGTTTGTTTATTACATCAGAGAAGACCGATTGCCCAACATTGAGGAGGGGGGAACAATGCACGAGAGGCATTCACAATGGCAGCAACAAGAAGCATTGGCAATGCTATCCTCCGAAACCACTCCCTCTATTTCCCTCGCCAGTCTCTTCCAAAGGTATGGTTTCCCCCCTTCCCAAATTCCCCACATCATCTCCAACAACTCCTTTCTCTTAGATTCCAACATACCTGAACTCGAGAAATCACTTGCCACTCTCTTCTCCTTCCGAATTCCCCAAAATGCCGTTGTCTCCCTCATTCGCAACTGCCCTGCCGTGTTGGAACCCAAGTTCCTTCAAAACTGGGAGCAGGGATTGTCGAAGCTCAAGGCCATGAACCCTTCCTCATCCATGATTGTGAACTTCTTGGAGTGTTCTAGAAGATTCCAACTGGACCCGGTTGAGGCTTCCAAGAAAGTCGAGGAATTGAAGGGATTGGGATTTTCTGATGACGTTGTGTGGAAGGTTTTGGAGGGTTTTCCGAGTGTGATTGCAGTGAGCAGGAGGCAACTTGCTTCTGTGATTGAGTTTCTGGTGGAATTTGGGATTCCGAGGGATGAGGTGGTTGATCGAGTTGTGCGGTTGAACCCAAGGGTTTTGGGAATTGGGGTTGAGCAGAGGTTGAAGCCCCTGATTCGTGAATTGGAGGAGTTAAGATTTCCTAGGAATGAAATTAGGACCGAGGATGGTTTGCTGAGGGCTTGTTTTGAAGTGAAGTTAAAAGTGGATTGCTTGTGCGATCACGGTTTGATTCGAAGTGATGCTTTGAAGTTGTTATGGAAAGAGCCAAGGTTGATAACCTATGATGTAGAGTCCATTGAGAAAAAGATTGGGTTCTTGGTGCAGAGGATGAATTATAGTGTTGATTGTTTGCTTCATGTTCCTGAGTACTTGAGTGTGAACTTTGAGAAGCAGATTGTTCCTAGGTACAATGTGATGGAGTACTTGAAAGCGAAAGGCGCGCTTGGTTTCGAGGTTGGACTAAAGGACATGGTAAAGCCAACCAGGCTTAGATTTTACAATCTTTATGTCAAGCCCTATCCAGAGTGTGAAAAGATTTATGGGCGGTTTTCTGGAATTACCAAAGTTAAAAGTAAGCATCCACCTGGTCTATGGAAACTCTTTAAACCTCCCAAGTTCCTGACAACCGATGAAGATGCGAAGAATTTGAAGTCATTCATGAACACACTGCAAGCTGCTAACTACATTCTCTAG 1860 0.4962 MIRVHAGFSNRVGSNAPFNPAQLPDSSSSLHSSNYARVPADGIVAPLSTFPSTSFNSCVATRVSALSLTHLYQVPKPHRAAVRLTLAARRAALLSHRGRSVILLPVIRPSCASTARQCSSPARQCLSRRPSLSLKPLLTALAEAPTTITASGCHRCLSKVCSELLVSLFLSSSSSLCLRAPSLSVQAYSLPPSPPVRKAASIYVFVYYIREDRLPNIEEGGTMHERHSQWQQQEALAMLSSETTPSISLASLFQRYGFPPSQIPHIISNNSFLLDSNIPELEKSLATLFSFRIPQNAVVSLIRNCPAVLEPKFLQNWEQGLSKLKAMNPSSSMIVNFLECSRRFQLDPVEASKKVEELKGLGFSDDVVWKVLEGFPSVIAVSRRQLASVIEFLVEFGIPRDEVVDRVVRLNPRVLGIGVEQRLKPLIRELEELRFPRNEIRTEDGLLRACFEVKLKVDCLCDHGLIRSDALKLLWKEPRLITYDVESIEKKIGFLVQRMNYSVDCLLHVPEYLSVNFEKQIVPRYNVMEYLKAKGALGFEVGLKDMVKPTRLRFYNLYVKPYPECEKIYGRFSGITKVKSKHPPGLWKLFKPPKFLTTDEDAKNLKSFMNTLQAANYIL* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0527 619 PANTHER CGI-12 PROTEIN-RELATED 443 610 IPR003690 GO:0003690|GO:0006355
Amo01g0527 619 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF15, MITOCHONDRIAL 443 610 - -
Amo01g0527 619 PANTHER CGI-12 PROTEIN-RELATED 261 443 IPR003690 GO:0003690|GO:0006355
Amo01g0527 619 SMART mt_12 369 399 IPR003690 GO:0003690|GO:0006355
Amo01g0527 619 SMART mt_12 405 436 IPR003690 GO:0003690|GO:0006355
Amo01g0527 619 SMART mt_12 503 537 IPR003690 GO:0003690|GO:0006355
Amo01g0527 619 SMART mt_12 331 364 IPR003690 GO:0003690|GO:0006355
Amo01g0527 619 SMART mt_12 471 502 IPR003690 GO:0003690|GO:0006355
Amo01g0527 619 Gene3D Transcription termination factor 3, mitochondrial 389 572 IPR038538 -
Amo01g0527 619 Pfam mTERF 252 441 IPR003690 GO:0003690|GO:0006355
Amo01g0527 619 Pfam mTERF 456 554 IPR003690 GO:0003690|GO:0006355
Amo01g0527 619 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF15, MITOCHONDRIAL 261 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0527 Amo-Chr1 7890581 7894986 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo01g0527 mTERF 5.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0527 - - aip:107646489 723.391