Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0476 ATGTGTCGGTTAGGGCTTCCTTTAACAGCCATAGATAGGTTCTTATGTAGCCAACAACAAAGTCAAGTCCTTCACAATGATGATAGTGTTTTTGATGAAGATTTTCTTCAAACTAGGTTTTCTAATTGTTATTATGGTGGTGGTTCAAATAACCCTTATTATTATAAGCTTGTGTGGCCTAATTGCACTACTCAAGAAGCAAGCATTGTTGGTTTCAATAATTGGCTACAACAAATTCCCACATTGTGTCACAATCAAGAAGATGTTCATCAAGCTTTAGGGAAAACTAATGTCAAAGTTGTGGGAAGAAACCCTAAAAAAGCTTCTTCTTCCTCTTCTGTTTCCTTGATCAAAGGACAATGGACTCCTGAAGAAGACAGGAAATTGGAGAAGCTGGTGAAACAACATGGAACAAGGAAGTGGTCACAAATAGCTGAAAAATTGGAGGGAAGGGCTGGGAAGCAATGTAGAGAGAGGTGGCATAATCATCTCCGACCAGATATTAAGAAAGACGGTTGGAGTGAAGAAGAAGAGAGGATATTGGTGGAAACTCATGCCAAGGTTGGAAATCGTTGGGCAGAAATCGCGAAGCATATACCAGGGCGAACTGAAAACTCAATCAAGAACCATTGGAACGCAACAAAGAGAAGGCAGAACTCAAGGAGAAAGAACAGGAAGCCATCATCATCAACCAACTCAAACAATAATGGCAAACCACAATCTTCAATTCTCCAAGACTACATTAGAAGCCAAACCCTAATTGGTACCAATAATATCAATGCTCCTATTACCACTACTAACTCAACCCCAACTATTACTAGTGAATCTGAATGTGATAATAATAATCCATATTATTCATCACCAACAATCATAGCTGAATCATATGATGATGAGTTACTCTTCATGCAACAACTTTTCAAAGAGAATAATCAAATTGTCAATGGAGATGGTGTTGGTAAGAACCCTAGTGATGAATGTGGTGATGGGTTTGTTCATTATTCCAATAATTATTATTATCTTTCAAATCCATGGAACATGCACAACCCTACCACCAATAATAATAATAATGGTTACCTTGATTCTGATCTCTATATCTCTCAATTGATGAACAATGGAGTTTCAACAACAAGTTCATCATCATCACTTCATGAGGCTTATGAGAAGAATCAAAACATGGATTTTCATTGTTCAGCTGTGAAGAAAAGTGAGATGGATCTGTTAGAGTTTGTTTCCACTCATCATCAATTTTAA 1251 0.3725 MCRLGLPLTAIDRFLCSQQQSQVLHNDDSVFDEDFLQTRFSNCYYGGGSNNPYYYKLVWPNCTTQEASIVGFNNWLQQIPTLCHNQEDVHQALGKTNVKVVGRNPKKASSSSSVSLIKGQWTPEEDRKLEKLVKQHGTRKWSQIAEKLEGRAGKQCRERWHNHLRPDIKKDGWSEEEERILVETHAKVGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNRKPSSSTNSNNNGKPQSSILQDYIRSQTLIGTNNINAPITTTNSTPTITSESECDNNNPYYSSPTIIAESYDDELLFMQQLFKENNQIVNGDGVGKNPSDECGDGFVHYSNNYYYLSNPWNMHNPTTNNNNNGYLDSDLYISQLMNNGVSTTSSSSSLHEAYEKNQNMDFHCSAVKKSEMDLLEFVSTHHQF* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0476 416 CDD SANT 121 164 IPR001005 -
Amo01g0476 416 MobiDBLite consensus disorder prediction 199 241 - -
Amo01g0476 416 MobiDBLite consensus disorder prediction 225 241 - -
Amo01g0476 416 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 113 168 IPR017930 -
Amo01g0476 416 SUPERFAMILY Homeodomain-like 115 211 IPR009057 -
Amo01g0476 416 CDD SANT 173 215 IPR001005 -
Amo01g0476 416 Pfam Myb-like DNA-binding domain 121 178 - -
Amo01g0476 416 Gene3D - 171 243 - -
Amo01g0476 416 ProSiteProfiles Myb-like domain profile. 113 164 IPR001005 -
Amo01g0476 416 PANTHER MYB PROTEIN-RELATED 103 393 - -
Amo01g0476 416 MobiDBLite consensus disorder prediction 259 280 - -
Amo01g0476 416 PANTHER TRANSCRIPTION FACTOR MYB119-RELATED 103 393 - -
Amo01g0476 416 Gene3D - 117 169 - -
Amo01g0476 416 SMART sant 169 217 IPR001005 -
Amo01g0476 416 SMART sant 117 166 IPR001005 -
Amo01g0476 416 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 169 219 IPR017930 -
Amo01g0476 416 ProSiteProfiles Myb-like domain profile. 165 215 IPR001005 -
Amo01g0476 416 ProSiteProfiles SANT domain profile. 168 219 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0476 Amo-Chr1 6974817 6977295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0476 7 411 MYB Transcription Factor Family AT5G58850 39.679 1.39e-81 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo01g0476 Myb_DNA-bind_6 4.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0476 K09422 - gmx:100786295 289.271