Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0473 ATGGCAGGCATAGCAAGTTTCTTCAACAAGTTCCTGTCTATGTTCATCATCCTCATTGTTCACCTTGGTTGCTTCATCTTCACCACCAGCTACACATCAACAACAACAAAGCAAGAAAACAACAACAARAATAATAATAATRTCTTGCAACCATCTTCAAAGAAACGCAAAATCTCACCTTCATCACACTCACAACCWTCTTCACCTTCCCACCCAAAATTCAAAACCCACAAAGCACTCTCTTCTTCTTGGCATTTCATCAAACACCTTTTCTCCACCAAAACCAAAACCGCCACAACAACCACCACCCATCCRTCCCCACAATCCTCCACCGRCACCACTGCCACCYCAACCAGCAACTCCGCCTCCGCCACCGTTACCGCCGCCAGGTCCTCTCAGAATTCTCTTARTTCCTCATTGCAACCCGACCCGAGTTCCATGAACYTTCCTCGTCGGAACTTGCCCGGATCATTGGTCCGACCCGAATCTGAAATCTCCGGCGAGTTGGACAGCGGCCTCTTCTTCCCTCTCCGGAATGATATATTCCCCTGCACCGCGTGCGGCGAGATCTTCCAGAAGCCGCTCCTACTGGAGCAGCATCAATCTACGAAGCACGCGGTGTCGGAGRTACCCGGATCCGACCCCGGTCARAACATAGTCCAGATCATATTCAAGTCGGGTTGGCCCGAGATCCGAAAGTTCCCGACCATAACCCGGATCCTTAAGATCCATAACAGCCAAAAGATTCTCTCGCGGTTCGAGGAGTATCGCGAGGCTGTCAAGGAGAGGGCCGCGCTTCACGGCGGCATAATGTCCACGCGCCGCCGTGACGAGCGGTGCCTCGCCGATGGCAATGAGCTTATGAGGTTTCACTGTTCAACTTTTTTATGTGATTTGGGACTTAATGGGAATTCTTCAATTTGTTCGCAACAATTTTGTAATATTTGTGGGATAATTAAATCAGGGTTTTCCCCGAAATTAGATGGAATTTCCACGTTGGCATCCAGCTGGAGGGCACACGTGTCAATCCCAGAAGATATTGAAAGTGAYTTTWGCTTCATGAATGTYAAGCGAGCCATGCTGGTTTGRAGAGTSATTGCGGGTCGGYTRGGATCGGATTCAGACGAAGCSGAAAAGGAGGATGGTGGGAGTTTCGACTCCGTGATGGCACGTGGCGGRGACAGCGGKGTGTACACTCGGCTAGACGAGGAGGAYCTTTTGGTGTTTAATCCTAGGGCTGTGCTTCCTTGCTTTGTGATTGTGTATAGTGTGTGA 1275 0.4902 MAGIASFFNKFLSMFIILIVHLGCFIFTTSYTSTTTKQENNNKNNNNXLQPSSKKRKISPSSHSQPSSPSHPKFKTHKALSSSWHFIKHLFSTKTKTATTTTTHPSPQSSTXTTATXTSNSASATVTAARSSQNSLXSSLQPDPSSMNXPRRNLPGSLVRPESEISGELDSGLFFPLRNDIFPCTACGEIFQKPLLLEQHQSTKHAVSEXPGSDPGQNIVQIIFKSGWPEIRKFPTITRILKIHNSQKILSRFEEYREAVKERAALHGGIMSTRRRDERCLADGNELMRFHCSTFLCDLGLNGNSSICSQQFCNICGIIKSGFSPKLDGISTLASSWRAHVSIPEDIESDFXFMNVKRAMLVXRVIAGRLGSDSDEAEKEDGGSFDSVMARGGDSGVYTRLDEEDLLVFNPRAVLPCFVIVYSV* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0473 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 182 210 IPR013087 -
Amo01g0473 424 ProSitePatterns Zinc finger C2H2 type domain signature. 184 205 IPR013087 -
Amo01g0473 424 MobiDBLite consensus disorder prediction 35 75 - -
Amo01g0473 424 SUPERFAMILY ADP-ribosylation 213 423 - -
Amo01g0473 424 MobiDBLite consensus disorder prediction 97 152 - -
Amo01g0473 424 PANTHER NUCLEIC ACID BINDING PROTEIN 3 423 - -
Amo01g0473 424 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 423 - -
Amo01g0473 424 MobiDBLite consensus disorder prediction 97 162 - -
Amo01g0473 424 Gene3D - 211 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0473 Amo-Chr1 6945935 6947898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0473 84 424 C2H2 Transcription Factor Family AT2G29660 52.299 8.22e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo01g0473 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0473 - - aip:107608029 703.745