Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0464 ATGCTCTTTGCTTTGCATGATAAGGATACACCAGATAGGTGGCACAGGGTAGCTGAGATGATTCCAGGGAAAACTGTTCTTGATGTGATGAAGCAGTACCATGAATTGTTAGCAGATGTTAGTGATATTGAAAATGGGTTGGTACCAATTCCAGGTTACAGTACCAGCACAACAACAACTACTTCACCTTTTACATTGGATTGGGTCAACAATAGTTGTTCTGGGTATGATGGGTTTAAAAGGAATTTGGTGCTGCTGCAAAGAGATCTTCAAAAACACCAGAACAAGAGAGGAAGAAAGGTATTGTTCCTACTTGGTCTAAAGAAGTATGGCAAAGGAGATTGGAGGAACATTTCGCGCAACTTCGTGATCACTCGGACGCCAACTCAGGTGGCGAGCCATGCTCAGAAGTACTTCATCCGACAACCTCTCCCGGGGCCAAAGACAAGAGGAGGGGCAAATGATGATACAAGTTCAAATTCAAAGGATGGAGGAGTAATTCACTATGAGATTTCAACATGGATGATGAAGCTTTTATGTCTACATTCACTTAATGGTGTTAATTCCTCCTATGGTTTTAAGATGCAGGGTCAGAATATGCATAAAAGTGCTCTTAATGCAGTCTTCTTACTTAGCACTTCAGACACAAAACATTGCTTTCCAAATGTAGTTGTCCCTTACAACACATTACTATCATATTGCCTGCTTGTAATTCAAATTATTTATGCCTAG 732 0.4071 MLFALHDKDTPDRWHRVAEMIPGKTVLDVMKQYHELLADVSDIENGLVPIPGYSTSTTTTTSPFTLDWVNNSCSGYDGFKRNLVLLQRDLQKHQNKRGRKVLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQPLPGPKTRGGANDDTSSNSKDGGVIHYEISTWMMKLLCLHSLNGVNSSYGFKMQGQNMHKSALNAVFLLSTSDTKHCFPNVVVPYNTLLSYCLLVIQIIYA* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0464 243 CDD SANT 1 37 IPR001005 -
Amo01g0464 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 143 IPR017930 -
Amo01g0464 243 Pfam Myb-like DNA-binding domain 102 139 IPR001005 -
Amo01g0464 243 Coils Coil 76 96 - -
Amo01g0464 243 SMART sant 96 141 IPR001005 -
Amo01g0464 243 SMART sant 1 39 IPR001005 -
Amo01g0464 243 Gene3D - 97 143 - -
Amo01g0464 243 CDD SANT 102 139 IPR001005 -
Amo01g0464 243 PANTHER MYB TRANSCRIPTION FACTOR MYB51 4 149 - -
Amo01g0464 243 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 4 149 IPR043363 -
Amo01g0464 243 SUPERFAMILY Homeodomain-like 102 142 IPR009057 -
Amo01g0464 243 Gene3D - 2 50 - -
Amo01g0464 243 SUPERFAMILY Homeodomain-like 3 45 IPR009057 -
Amo01g0464 243 MobiDBLite consensus disorder prediction 142 161 - -
Amo01g0464 243 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 102 142 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0464 Amo-Chr1 6850187 6851542 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo01g0464 Myb_DNA-binding 6.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0464 - - gmx:100784163 194.512