Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0457 ATGAAATGTGCAAGCTTTTTTGCATTGTTTCTTTCTGGAAAAAGAAACACACAAGAATCAAAGGTTGTTGAAGACAGAAAGAGTACAAACAAAGTCAAAGGAACATCATCTTCATCTGATTTATCATCTGATAGCAACAAGAGTTCATCCTCAAAATTGAAGTTTTCACATTCCTATGGATCATCTAGCACTTCAAATACTCAGCTTGGAACTGCAGGGAACTTCTCCTTTGAAGAAATCTGCAAGGCAACAGCAAAATTCTCTGCAGCTAATAAGATTGGGGAAGGTGCCTTTGGAACTGTTTATAAGGGAAAGCTTAATGATGGAACTCTTGTTGCCGCAAAGCGCGCCAACAAGGATGTAGAAAACAAGAACTTAGCTGAGTTCAAGAATGAAGTATCCACCTTGTCAAAGATTGAGCATCTGAATCTTGTGAGGCTGTATGGATATTTGGAGCATGCAGATGAAAAGATTATTGTTGTCGAATATGTTAATAATGGATCACTCCGGGAACATCTAGATGGTACAAGGGGTGATGGGCTTGAAATTGGTGAGCGTTTAGACATAGCAATTGATATAGCTCATGCAGTTACTTACCTTCATATGTACACAGATCATCCAATTATTCATAGAGACATCAAAGCATCAAACATCTTGCTTACTGACAAACTAAGGGCTAAAGTGGCCGACTTTGGTTTCGCCCGGCTGGCTGCTGAAGACCCTTCTGCCACCCATGTTTCAACAAAACTTAAAGGAACAGCAGGCTACATTGATCCTGATTACATGAGATCTTACAAGCTTTCTGAGAAGAGTGATGTGTATTCCTTCGGCGTGTTGCTTGTTGAGATGGTTACCGGACGACATCCAGTTGAGCCGAGGAGACCTCTCAGTGAGAGAGTTACAATTAAATGGGCACTGCAGATGCTGAAACAGGGAGAAGTTGTGATCGCCATGGATCCGAGGCTGCGAAGAAGTACGGCCTCGAAAAAGGCCGTAGAGAAGGTTCTAAAGCTAGCTCACCAGTGCCTTGCACCTTCAAGACAATCAAGGCCAACCATGAAGACATGTGCTGAGGTTTTATGGGGTATCCGGAAAGATTTTAGAGACAAAACATCTTCTCATCTTAGCCATGATTCTCACCATTCTGCTAAGTATCCTCATAGAGATGCCAAGAATGACAGGCATAAGTTATTTGATATTGAAGGTGACAATGACCGTAAATTTGTATCTGCATAG 1236 0.4167 MKCASFFALFLSGKRNTQESKVVEDRKSTNKVKGTSSSSDLSSDSNKSSSSKLKFSHSYGSSSTSNTQLGTAGNFSFEEICKATAKFSAANKIGEGAFGTVYKGKLNDGTLVAAKRANKDVENKNLAEFKNEVSTLSKIEHLNLVRLYGYLEHADEKIIVVEYVNNGSLREHLDGTRGDGLEIGERLDIAIDIAHAVTYLHMYTDHPIIHRDIKASNILLTDKLRAKVADFGFARLAAEDPSATHVSTKLKGTAGYIDPDYMRSYKLSEKSDVYSFGVLLVEMVTGRHPVEPRRPLSERVTIKWALQMLKQGEVVIAMDPRLRRSTASKKAVEKVLKLAHQCLAPSRQSRPTMKTCAEVLWGIRKDFRDKTSSHLSHDSHHSAKYPHRDAKNDRHKLFDIEGDNDRKFVSA* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0457 411 Gene3D Transferase(Phosphotransferase) domain 1 164 389 - -
Amo01g0457 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Amo01g0457 411 Gene3D Phosphorylase Kinase; domain 1 44 163 - -
Amo01g0457 411 MobiDBLite consensus disorder prediction 32 49 - -
Amo01g0457 411 SMART serkin_6 87 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0457 411 Coils Coil 112 132 - -
Amo01g0457 411 SUPERFAMILY Protein kinase-like (PK-like) 61 363 IPR011009 -
Amo01g0457 411 MobiDBLite consensus disorder prediction 17 49 - -
Amo01g0457 411 PANTHER RECEPTOR-LIKE PROTEIN 55 25 382 - -
Amo01g0457 411 MobiDBLite consensus disorder prediction 371 394 - -
Amo01g0457 411 ProSitePatterns Protein kinases ATP-binding region signature. 93 115 IPR017441 GO:0005524
Amo01g0457 411 ProSiteProfiles Protein kinase domain profile. 87 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g0457 411 PANTHER CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1 25 382 - -
Amo01g0457 411 Pfam Protein tyrosine and serine/threonine kinase 90 360 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0457 Amo-Chr1 6767480 6771026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0457 55 364 Receptor kinase-like Gene Family AT4G39110 41.534 1.83e-68 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Amo01g0457 PK_Tyr_Ser-Thr 6.7e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0457 - - gmx:100815871 573.163