Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0408 ATGGCTGCCGCAGATGTTGAGTTCTGGTGCTTCGTTGGTGGGCTTGCATGGGCTACTGATAACGAAGCTCTAGAGAAAGCCTTCTCTGCCTACGGAGAAATCGTTGAATCAAAGGTACGTTCCTTCTTCATCTTTGATTCAAAGGCGAAGATCGATCAATCTGATGTGAATTCTCGTGGTTGTGTTCAAGTCATCAACGATCGCGAAATTGAAAGATCCAGAGGTTTCAGATTTGTGACCTTTGCTTCTGAGCAAGCCATGAGGAATGCGATTGATGACATGAACGGTTCCAGCCTTGACGTTCGTAACATCACTGTCAACGAGGCTCGTAACATCACCGTCAACGAGACTCAATTCCGTGAAGGTGGCGGAGGTGGCTTCAGAAGCGGAGGCGGCGGTGGATATGGTGGTGGCGGATTTAGCCACCAGGGCGGTGGTGGTGGATACAGAAGTGGGACCGTCATGAAGGTGGATACAACAGAAACGATGGTGACAGCGATCATCAAGAATTGA 513 0.4932 MAAADVEFWCFVGGLAWATDNEALEKAFSAYGEIVESKVRSFFIFDSKAKIDQSDVNSRGCVQVINDREIERSRGFRFVTFASEQAMRNAIDDMNGSSLDVRNITVNEARNITVNETQFREGGGGGFRSGGGGGYGGGGFSHQGGGGGYRSGTVMKVDTTETMVTAIIKN* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0408 170 PANTHER GEO13361P1-RELATED 62 153 - -
Amo01g0408 170 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 39 - -
Amo01g0408 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 40 IPR000504 GO:0003723
Amo01g0408 170 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 104 IPR000504 GO:0003723
Amo01g0408 170 SUPERFAMILY RNA-binding domain, RBD 10 139 IPR035979 GO:0003676
Amo01g0408 170 Gene3D - 3 152 IPR012677 -
Amo01g0408 170 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 62 153 - -
Amo01g0408 170 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 111 IPR000504 GO:0003723
Amo01g0408 170 SMART rrm1_1 9 107 IPR000504 GO:0003723
Amo01g0408 170 PANTHER GEO13361P1-RELATED 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0408 Amo-Chr1 6396180 6396987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0408 11 119 Eukaryotic Initiation Factors Gene Family AT4G34110 28.070 6.02e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0408 - K13195 ahf:112791882 278.1