Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0401 ATGAGGACGATCAAAGAGTTTTTCTTGAGGCACTACTACTCTCTGTGGTTGTCACCATCACTATCACCACCGTCACACATGAATTCTAACGACGTAGAGAATCACAGGAACAGCGACGTCGCCACAAAACAAAGGAAGATCAACAAAGAGGAGGGGAGAGGCGAATCATCCTCGATTTTCTCGTTCGTGTGCGAAATCTGCATTGACACTAAAACCGAAGCAGAAAATTTCTCTATAACCGGTTGCAGCCACTCATATTGTACGGATTGCGTGGTGAAATACGTTGGTTCTAAACTTGACGACAACGTGATTAATATCCGGTGTCCAGTACCCCGCTGTGGTGGTTTCTTGGAACTCGACGGTTGCCGCGAGGTTCTGCCAAAGATGGTTTTCGATCGGTGGGTTAAGTTATTGTGTGAAGCTGCTGTTGTTGAGAACGAGAGCGAGAGATTCATGTATTGTCCCTTCAAGGACTGCTCTGCCCTTATGATCGTCGACGATGATTCACCGACGGAATCAGAATGCCCTAGCTGTAATAGGCAGATCTGCGTCTCGTGCGAGACAGTTTGGCATCATGGGAGCACGTGCGAGGAATTTGGGAGGACAGATAATAAATATAGAGTAGTGATGGAGATCGATGCTCAAGTACGACATCTCCTTTTATATTTTTGTCGCCGGCAGCTCAAGCTCCGCCGCACACAATTTTTTGAAGATCACTGCTCAAACACAGTATCTCCTTTTATATTTTTGCCGTCGGCAGCTCAAGCTCCGCCGCACGCATCTTCTTCCGCGTCACCACGTCAGACGCTCAACAATTTCATCGGAACTTATACAAGCTGTGGATTATTGACATCTTCCATCCAGATGCTCTTTATCTTATCTTTATTTACTTTTATCTTTCATAGGCCAATACTCTATATATACTTAAAAAAAAAAGATAAAGCCAAATTAATTGGCTTGGGTCATTCTGTTGAATCTTATATATCAAGTCCCGTTTAA 999 0.4424 MRTIKEFFLRHYYSLWLSPSLSPPSHMNSNDVENHRNSDVATKQRKINKEEGRGESSSIFSFVCEICIDTKTEAENFSITGCSHSYCTDCVVKYVGSKLDDNVINIRCPVPRCGGFLELDGCREVLPKMVFDRWVKLLCEAAVVENESERFMYCPFKDCSALMIVDDDSPTESECPSCNRQICVSCETVWHHGSTCEEFGRTDNKYRVVMEIDAQVRHLLLYFCRRQLKLRRTQFFEDHCSNTVSPFIFLPSAAQAPPHASSSASPRQTLNNFIGTYTSCGLLTSSIQMLFILSLFTFIFHRPILYIYLKKKDKAKLIGLGHSVESYISSPV* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0401 332 SMART ibrneu5 132 196 IPR002867 -
Amo01g0401 332 Pfam IBR domain, a half RING-finger domain 134 196 IPR002867 -
Amo01g0401 332 MobiDBLite consensus disorder prediction 27 52 - -
Amo01g0401 332 ProSiteProfiles TRIAD supradomain profile. 60 332 IPR044066 -
Amo01g0401 332 SUPERFAMILY RING/U-box 62 141 - -
Amo01g0401 332 Pfam Zinc finger, C3HC4 type (RING finger) 64 109 IPR018957 GO:0046872
Amo01g0401 332 ProSitePatterns Zinc finger RING-type signature. 82 91 IPR017907 -
Amo01g0401 332 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 49 211 IPR031127 GO:0004842|GO:0016567
Amo01g0401 332 SUPERFAMILY RING/U-box 146 199 - -
Amo01g0401 332 ProSiteProfiles Zinc finger RING-type profile. 64 112 IPR001841 -
Amo01g0401 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 145 IPR013083 -
Amo01g0401 332 MobiDBLite consensus disorder prediction 32 52 - -
Amo01g0401 332 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 49 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0401 Amo-Chr1 6345426 6347784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0401 64 204 C3H Transcription Factor Family AT2G19610 26.490 2.47e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0401 K11975 - aip:107607785 204.912