Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0394 ATGTGGAATGGAATTTATGTAATTGGTATAAGTTGTGTGTCTAAAGATATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCGGATCCACATTCCTTTCAACCTAGTGGTGTTTGTTCTGAGCCTTGGTGGCATGGTGGTGGCTACAGTGCTATCCCTCAAGCAATGCCTGGTGCAAATGCATCCAATTCCTCCTCTCTTGAATGCCCTAATGGTGATTCAGAATCCAATGAGGAAGGTCAGTCCTTATCCAATAGTGGGATGAATGAGGAAGATGATGATGCTGCCAAGGATTCACAACCTGCCGATCCTAATCAATCAGGAAATTATGGACAAGAAAACCAAGGGATGCAGCATTCTGCACCTTCAATGCGCGAAGAAGGCCTCGCTCAGGCTCCACAGCTGGAACTCGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAAGATCCGTACTATGGGGGCATGATGGCAGCTTATGGACCCCAGCAATTGGGATTTGCTCCTTTTATAGGAATGCCCCATGCCAGAATGCCATTACCTCTTGAGATGGCACAAGAGCCTGTTTATGTGAATGCTAAGCAATACCAAGGAATTCTGAGGCGAAGACAGGCTCGAGCAAAAGCAGAACTTGAAAAGAAGCTAATAAAATCCAGAAAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGGGCAAGGGGTACCGGAGGGCGTTTTGCAAAGAAATCTGAAGTTGAGGGCTCAAACAAGGGCAAGGAAAAGGATGGTTCAGGTCCAGTCCTGTCATCACAGTCAATCAGTTCATCTGGTTCTGAACCTTTGCCTTGCGATTCCAATCAAACATGGAACTCTCCCAATGTGCAACTAAATGCAAGGGGAACGAAAGTGCACGACAAATACGAAAATGGCAGTGGCTCCTACCACAGTCATAATGGTTTGCAATCTTATCATTTGCATTCTGGTGACAGAGTGGATGAAGGGGACTGTTCGGGTCAGCAACGGGGAAGCATCACCAACGAGCACGCATCGGCGAGGCGCCTTGCTATTCAGTAG 1068 0.4663 MWNGIYVIGISCVSKDMQSKSETANRLRSDPHSFQPSGVCSEPWWHGGGYSAIPQAMPGANASNSSSLECPNGDSESNEEGQSLSNSGMNEEDDDAAKDSQPADPNQSGNYGQENQGMQHSAPSMREEGLAQAPQLELVGHSIACATNPYQDPYYGGMMAAYGPQQLGFAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKSEVEGSNKGKEKDGSGPVLSSQSISSSGSEPLPCDSNQTWNSPNVQLNARGTKVHDKYENGSGSYHSHNGLQSYHLHSGDRVDEGDCSGQQRGSITNEHASARRLAIQ* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0394 355 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 46 346 - -
Amo01g0394 355 SMART cbf3 186 247 IPR001289 GO:0003700|GO:0006355
Amo01g0394 355 MobiDBLite consensus disorder prediction 222 241 - -
Amo01g0394 355 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 46 346 IPR001289 GO:0003700|GO:0006355
Amo01g0394 355 MobiDBLite consensus disorder prediction 242 258 - -
Amo01g0394 355 Gene3D - 187 249 - -
Amo01g0394 355 MobiDBLite consensus disorder prediction 220 355 - -
Amo01g0394 355 ProSiteProfiles NF-YA/HAP2 family profile. 187 247 IPR001289 GO:0003700|GO:0006355
Amo01g0394 355 MobiDBLite consensus disorder prediction 56 130 - -
Amo01g0394 355 MobiDBLite consensus disorder prediction 263 296 - -
Amo01g0394 355 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 189 244 IPR001289 GO:0003700|GO:0006355
Amo01g0394 355 MobiDBLite consensus disorder prediction 57 90 - -
Amo01g0394 355 MobiDBLite consensus disorder prediction 101 122 - -
Amo01g0394 355 ProSitePatterns NF-YA/HAP2 subunit signature. 192 212 IPR018362 GO:0003677|GO:0016602
Amo01g0394 355 PRINTS CCAAT-binding transcription factor subunit B signature 190 212 IPR001289 GO:0003700|GO:0006355
Amo01g0394 355 PRINTS CCAAT-binding transcription factor subunit B signature 221 244 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0394 Amo-Chr1 6275338 6279344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0394 32 289 CCAAT-HAP2 Transcription Factor Family AT5G12840 55.985 2.54e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Amo01g0394 CBFB_NFYA 6.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0394 K08064 - gmx:100808378 531.176