LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo01g0391	ATGGCAAATGCAGATTCAGGTGAATCTTCTGAAACCAACAAGAGTAACTACGACATTTTCTTGAGCTTTAGGGGTGAGGACACGCGTCACACGTTCACAGGTTATCTCTACGAAGCTTTGTCCCGCAAGGGAATCAAAACCTTCATGGACAATGAGAATCTCAGGATAGGCGACTCTATTGGACCTAATCTTCTTAAAACAATTGAACATTCAAGGATTTCGATTGTTGTTTTCTCTGAAAATTATGCTGCTTCCAAGTGGTGCCTTGATGAACTCGTGAAGATCCTCGAGTGCCGGAACGAGAAGAATATGCTCTTGTTTCCAATCTTCTACAAAGTAGCTCCCTCTGATGTACGGTATCAGAGAAACAGTTATGAAAAAGCCATGGCTGCTCACGAACTTAGGTATGGTTGTGGCTCTGAGAAGGTGAAGAAATGGAGGTCAGCATTGTTTGATGTATCCCAAATTTCAGGACATGTTTTGAGAGAGGGGTATGAATACAAGTTCATTCAAGATATTGTTTGCAAGGCCGATGCTAAATTACTATCTTCGAAACAGTTACACATTGATGAGGACATGGTTGGGCTGCAGTTTAAAGTTGAGGAAGTGAAGTCACTTCTAGATCTCAAGTCTAGTGACAGCACTTCCATGTTGGGGATTTATGGAATTGGTGGTATTGGCAAAACAACACTTGCGAAAGCTTTGTATAACACCATCTGCAACCAGTTTGAAGGTGCTTGTTTTCTCTTCGATGTCAGAAAAACTTCAAATCAAGACAAGGGGCAAGTGCATCTGCAACAAACTCTCTTGTTGGAACTGTTGGAAGAGGGAAAAATCAAGTTTAGCAGCGTAGAAAAAGGGATCTCTATATTGAAAGACAGACTTGCTGGAAAAAAAGTCCTTGTAGTCCTTGATGATGTTGACAACATGGAACAATTAAGAGCATTGGCAGGAAAATGTAGTTGGTTTGGTTCCGGGAGCAGGATTATTATAACAACAAGGAATACATATTTGCTAATAGCTCATCAGGTCAAAAGCATTTATGAGATGAAAATGTTAAATGTCTATGAATCTCTTGAGCTCTTTTGTCTGAATGCATTCAAAATGAGTAGTCCTGTAACAAACTATCATGACCTTTCCATTAGAGCAATAGGGTATGCCAAAGGGCTTCCATTGGCTTTAAAAGTTATAGGCTCTAATTTGATCGGCAAAGATTTAAATGAGTGGAAGTCTGCATTGAAGAAATATAAGCGGAATCCTCATAGAGATATTCAAAGCATTTTAAGAATAAGCTATGATAGTTTAGAAAGCAATGAAAAGGACATTTTTCTTGACATCGCATGCTTCTTCAATGGGCAGAGGTTGGAGTATGTGAAAAGAATACTTGATGGGTGTGAGTTCTACACGGAAGATGGTCTTAGAATACTTATTGATAGATCTCTCATAACAGTTGAAGATGGTCACTTGAGGATGCATGATCTAATACAGGATATGGGTAGAGATGTTGTAAAGCAGGAGGCGCCAAAAGATGCCGCTGAACGTAGTAGATTATGGCTTAGAGAAGATGTCCTTCAAGTACTAACTGAAAATAGAGGAAGTAGCAAAATTGAAGGGATAAAGCTTGATTGCCTGGAAGAAAATTTGATTTCTAGAGCCTTTGAGGAGATGAAGAAGCTTAGAATTCTCATCGTGCGGAACACAAGCTTCTCATTCTCATTCGGACGTATTCATCTACCAAACCAGTTAAGGCTGCTTGATTGGAAGGGTTTCCCTTCGAAATCTTTCCCACCAGATTTTTATCCCAAGAAAATTGCTGCCTTCAACTTACGTTGCAGTCCTCTTGTATTGAAAAAACCATTTCAGAAATTTGAGCATTTGAGCTACATGAATTTCTCCTATTGTCAATCCATCACTAGAATTCCTGATGTGTCTGGAGCCAAAAATTTAAAAGAATTGATACTTAATAAATGCAAGAAACTGGTAAAGGTTGATGAATCGGTCGGTTTTCTCCCTAACCTTGTTTACTTAAGTGCTTCTGGATGCATTCAACTAAGAAGTTTTCTGCCAAGAATCTTTTTGCCGTCTCTTGAATTCCTTTCCTTTGACATGTGTAGAAGACTTGCATTCTTTCCAGACATAGTGGGAACAATGGATAAGCCATTAAAAATTTGTATGAAAGATACTGCTATTAGAGAGCTTCCACCTTCCTTTGCCAATCTTAGTGGACTTGGTTACTTAAATATGTCAAATTGTAAGCAACTCCAAAATCTACCAAGTAAACTATTTGTCTTGCCAAATTTTGTCACATTAAAAATTGGAGGGTGCCCTCAACTTCGGGAATCATTTACACAGTTCAAAGGATGCGATTCTAGAGCAGAGTGCTGGCCAAATCTAGAGACTTTGCATTTCTGCAATGCCAGTCTATCAGATGAAGATCTTTATATGATTGTACATAGTTTCCCAAAGCTGAGAGAATTAAATGTGTCATCAAACTGTTTTGTATCAATCCCAGCGTACATTAAGGAATCTATTAACTTGACAACTCTTGATGTGAGTTATTGCCTGAAGCTACAGCAAATTCCAGCACTGCCCTCTAGTATTCAAAAAGTAGATGCAAGACACTGCAATTCCTTAACAGCTGACTCATCAAGTACGCTTTGGTCACAGATGCCCAGAGAGATTGATAGATTAGAAGTTGTGATGCCCGAAACAGAGATTCCAGAATGGTTGGACTATCATGGCCATGGTGTGATTCCCATTTTCTGGGCTCGTGGCAAGTTCCCTGTTGTGGCTTTGGCCTTTGTGTTCGCCGAAATAAACTATCATGCTGTTAACTTGCACTTGTTCATTGACAATGAGCATGTAAGTGTTCAAAGCCAACATCTTATTTTCAATATAGCAGAAGATCATGTGCTGTTGTGCGACCTGCGAGTTTTATTCAGAGATGAGGAGTGGAAGAGGCTTGATGCTCGTTTCCGACATGATAATTGTTGGAAGTCCATCCAGGTGAAGTGTGAACCAGACATCATCCTGAAAGACTGGGGGGTTCATGTATATAAGAAAGAAACAAACATGGCTAATATCCAATTCTCATGTCCATATACAGCTACCTTAGGATCTCGATCGTTTATGGATTTAACCTTGAACATGATATGGGTATCAAGAGATTGGGTGGAGGAAGGAAGTGCAACAGGAACAGATTCCTCAAGTGATGTGGAAGAATTGGATACTATTGTACAAGAGAAAGAAGCATCATGCTCAAAAAGTGTCAAGGTACTTGACAATTCAAGTCCTTGTGCTGACTCTTGCAGCTGCTGCTACTCACCCGGATCGTCATCTTTCAAGAAACTTCGTCGTTTTAAGTTCAGAAGACGATTGTCGATAAATATGATCAGTCGATGGCCGGAAGATGATGTTGATGATATTGATTTTAGGAACCAAGAGCCTCTTTCCTTCTCAGAGAACCTCCAAACTGTGATGGAAAACTTGAGGAGGTTGGCGGCTCCAAGACAAAAGAAAGGCATGAGCAACGGAGACCATGACAATGATAGCTTGAAATGGCTGGCTGAGACAGAGATATTAAGTGATGGTGAGTACGAGGACGAAGAGGAAGAGTCAGATTCAGAAGCATAG	3633	0.3997	MANADSGESSETNKSNYDIFLSFRGEDTRHTFTGYLYEALSRKGIKTFMDNENLRIGDSIGPNLLKTIEHSRISIVVFSENYAASKWCLDELVKILECRNEKNMLLFPIFYKVAPSDVRYQRNSYEKAMAAHELRYGCGSEKVKKWRSALFDVSQISGHVLREGYEYKFIQDIVCKADAKLLSSKQLHIDEDMVGLQFKVEEVKSLLDLKSSDSTSMLGIYGIGGIGKTTLAKALYNTICNQFEGACFLFDVRKTSNQDKGQVHLQQTLLLELLEEGKIKFSSVEKGISILKDRLAGKKVLVVLDDVDNMEQLRALAGKCSWFGSGSRIIITTRNTYLLIAHQVKSIYEMKMLNVYESLELFCLNAFKMSSPVTNYHDLSIRAIGYAKGLPLALKVIGSNLIGKDLNEWKSALKKYKRNPHRDIQSILRISYDSLESNEKDIFLDIACFFNGQRLEYVKRILDGCEFYTEDGLRILIDRSLITVEDGHLRMHDLIQDMGRDVVKQEAPKDAAERSRLWLREDVLQVLTENRGSSKIEGIKLDCLEENLISRAFEEMKKLRILIVRNTSFSFSFGRIHLPNQLRLLDWKGFPSKSFPPDFYPKKIAAFNLRCSPLVLKKPFQKFEHLSYMNFSYCQSITRIPDVSGAKNLKELILNKCKKLVKVDESVGFLPNLVYLSASGCIQLRSFLPRIFLPSLEFLSFDMCRRLAFFPDIVGTMDKPLKICMKDTAIRELPPSFANLSGLGYLNMSNCKQLQNLPSKLFVLPNFVTLKIGGCPQLRESFTQFKGCDSRAECWPNLETLHFCNASLSDEDLYMIVHSFPKLRELNVSSNCFVSIPAYIKESINLTTLDVSYCLKLQQIPALPSSIQKVDARHCNSLTADSSSTLWSQMPREIDRLEVVMPETEIPEWLDYHGHGVIPIFWARGKFPVVALAFVFAEINYHAVNLHLFIDNEHVSVQSQHLIFNIAEDHVLLCDLRVLFRDEEWKRLDARFRHDNCWKSIQVKCEPDIILKDWGVHVYKKETNMANIQFSCPYTATLGSRSFMDLTLNMIWVSRDWVEEGSATGTDSSSDVEELDTIVQEKEASCSKSVKVLDNSSPCADSCSCCYSPGSSSFKKLRRFKFRRRLSINMISRWPEDDVDDIDFRNQEPLSFSENLQTVMENLRRLAAPRQKKGMSNGDHDNDSLKWLAETEILSDGEYEDEEEESDSEA*	1211

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo01g0391	1210	Pfam	TIR domain	16	176	IPR000157	GO:0007165
	Amo01g0391	1210	ProSiteProfiles	TIR domain profile.	15	181	IPR000157	GO:0007165
	Amo01g0391	1210	SUPERFAMILY	L domain-like	490	879	-	-
	Amo01g0391	1210	PRINTS	Disease resistance protein signature	387	401	-	-
	Amo01g0391	1210	PRINTS	Disease resistance protein signature	294	308	-	-
	Amo01g0391	1210	PRINTS	Disease resistance protein signature	738	754	-	-
	Amo01g0391	1210	PRINTS	Disease resistance protein signature	217	232	-	-
	Amo01g0391	1210	SUPERFAMILY	Toll/Interleukin receptor TIR domain	8	158	IPR035897	-
	Amo01g0391	1210	SMART	till_3	16	156	IPR000157	GO:0007165
	Amo01g0391	1210	Gene3D	Ribonuclease Inhibitor	503	723	IPR032675	-
	Amo01g0391	1210	Gene3D	Ribonuclease Inhibitor	724	900	IPR032675	-
	Amo01g0391	1210	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	12	939	-	-
	Amo01g0391	1210	Gene3D	-	181	347	IPR027417	-
	Amo01g0391	1210	MobiDBLite	consensus disorder prediction	1166	1186	-	-
	Amo01g0391	1210	Pfam	NB-ARC domain	199	436	IPR002182	GO:0043531
	Amo01g0391	1210	Gene3D	-	9	180	IPR035897	-
	Amo01g0391	1210	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	12	939	IPR044974	GO:0006952
	Amo01g0391	1210	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	187	446	IPR027417	-
	Amo01g0391	1210	Gene3D	-	352	436	IPR042197	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo01g0391	Amo-Chr1	6246713	6252293	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo01g0391	12	810	WRKY Transcription Factor Family	AT4G12020	31.585	2.16e-101	353

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo01g0391	-		-	aip:107611979	2326.21