Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0379 ATGGAATCTCGAGTTGAAGTGAAACAACCAACACTGAATACATCCGGATTTTCAGATGACTTGCCTGAGACTCGCAAGATGAATTCTTCGAATGGAAGGCCAACAAACAAGTTTGAGGATCAAGTTCCTTTTAGCCCTGAAATAGCTTATCACCAGCCAGAATCTACTATGGCTGCACGTGGATCACATCCCGGAGAATCGCTCACTGTTTGCAGCGAAACATTGGGGGGCATTATTTACAGGAGCATACGGCTTGTGGTTTTCTCGAACAGACTCAACTTGCTTATGCCTTTTGGGCCTCTTGCGATTCTTGTTCAGAAATTGACTGGTCATCATGGCTGGGTCTTCGGTCTTAGTTTACTGGGGATAATGCCTCTGGCAGAGCGGCTCGGTTATGCCACGGAGCAACTTGCATTTTACACTGGAGATACAGTTGGGGGTCTTTTAAATGCTACATTTGGAAATGCAACAGAATTAATAATCTCGTTATATGCCCTGAAAAGTGGATTGACACGAGTAGTCCAGCTTTCATTGCTGGGTTCAATTTTGTCAAACATGTTGCTTGTGCTTGGATGTGCATTCTTAAGTGGTGGTATTGTTTTCAGCAAGAAGGAACAAGTATTTAACAAGGCAGCTGCTACGGTGAATTCAGGATTGCTGCTTATGGCAGTTATGGGCCTACTTTTTCCTGCTGTTCTTCATTATACACGAACTGAGGTGCACTTCGGGAAGTCAGAACTGGCGCTTTCAAGATTCAGCAGCTGTGTCATGCTTGTGGCCTATGCTGCATACTTATTTTTCCAGTTGAGAAATCAAAGTGGTCTCTATATCTCTGCGAACGAGGAAGAGAGAGAGACAGGCGACAACTCAAATGACGATGAATCTCCTGAAATTTCTAAATGGGAATCAATAATCTGGCTTTCGGTTATGACTGCTTGGATATCAATTCTTTCCGAATATTTGGTTGGCGCTATAGAGGGAGCATCTAATTCATGGAACATACCTGTAACATTCATTAGTGTCATATTGCTTCCACTGGTGGGGAATGCAGCAGAACATGCTAGTGCTATCATGTTTGCCATGAAAGATAAATTAGACATCTCCTTGGGAGTAGCGATAGGGTCGTCCACACAGATATCTATGTTCGTTATACCATTTTGTGTTGTTATGGGGTGGATAATGGGGCAACCATTGGACCTGAACTTTCAACTTTTTGAGACAGCAGCACTATTTCTAACTGTTATAGTTGTTGCCTTCATGTTACAGGAAGGAACTGCAAATTACTTCAAGGGGGTAATGCTTGTGCTTTGCTATCTGATAGTAGCAGCTAGTTTTTATGTACATGTAGATTCCAATTCTGAAGACCAGCCTGTTCCCTAA 1380 0.4283 MESRVEVKQPTLNTSGFSDDLPETRKMNSSNGRPTNKFEDQVPFSPEIAYHQPESTMAARGSHPGESLTVCSETLGGIIYRSIRLVVFSNRLNLLMPFGPLAILVQKLTGHHGWVFGLSLLGIMPLAERLGYATEQLAFYTGDTVGGLLNATFGNATELIISLYALKSGLTRVVQLSLLGSILSNMLLVLGCAFLSGGIVFSKKEQVFNKAAATVNSGLLLMAVMGLLFPAVLHYTRTEVHFGKSELALSRFSSCVMLVAYAAYLFFQLRNQSGLYISANEEERETGDNSNDDESPEISKWESIIWLSVMTAWISILSEYLVGAIEGASNSWNIPVTFISVILLPLVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFVIPFCVVMGWIMGQPLDLNFQLFETAALFLTVIVVAFMLQEGTANYFKGVMLVLCYLIVAASFYVHVDSNSEDQPVP* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0379 459 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 30 454 IPR004713 GO:0006812|GO:0008324|GO:0016021
Amo01g0379 459 PANTHER VACUOLAR CATION/PROTON EXCHANGER 2 30 454 - -
Amo01g0379 459 MobiDBLite consensus disorder prediction 1 38 - -
Amo01g0379 459 TIGRFAM caca2: calcium/proton exchanger 84 445 - -
Amo01g0379 459 Gene3D - 141 282 IPR044880 -
Amo01g0379 459 Gene3D - 290 447 IPR044880 -
Amo01g0379 459 Pfam Sodium/calcium exchanger protein 304 444 IPR004837 GO:0016021|GO:0055085
Amo01g0379 459 Pfam Sodium/calcium exchanger protein 114 269 IPR004837 GO:0016021|GO:0055085
Amo01g0379 459 MobiDBLite consensus disorder prediction 1 39 - -
Amo01g0379 459 TIGRFAM cax: calcium/proton exchanger 96 446 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0379 Amo-Chr1 6037642 6042745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0379 45 455 Antiporters AT1G55730 70.560 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0379 K07300 - gmx:100799276 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0283 11 4194102 4199275 Amo01g0379 01 6037642 6042745 hybridization