Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0371 ATGTTTATAGCTTGGATGTTAGCAAATAGGGTCTATCCTGAAGGAAAAGATTTGACGTATGTTGAGTTCCCACGGCATTTTGTTTATGTTGTTGATAATAGGGAATGGAAACCAAGACAAAGAGGATTTTCAATCGGTAGATTGAGTTTTGTTCCCCCAACTGCGGGTGAATTGTTTTATATGCGTTTGTTATTAAATGTACAAAGAGGGTGTACTAGCTTTAAGAGCATTAGAACAGTTAATGGGACTACTTATGATACATTTCAAGAAGCATGTTCTGCATTAGGATTGTTGACTGATGATAATGAGTTTGTTGAAGCTATTAAAGAAGCTGCTCTGTTAGGAACAGGCTTGCAACTCAGACGATTATTTGTAACATTATTATTGTCAGCTTCAATCAGTAGACCTTTGTCTGTTTGGAATCAAACTTGGGTGCTGATCATTTTTTATATTTATTTTTGGTTTAATTTTTTTAAAGTTGTTAAGCAAATACATTGTGAGAGAACATTAAAGAAGATGCATACTTTATTTGATCCAATCAAGTGCATTACGCCTTGGAGAGAAACATGGAGGTTGAGAGTGAAAGTTGTTAGACTTTGGTTTCATGGAAACTCAGTACTAGAAGAAAATGATGATGGGTTGCTGCACCTTATACTGATAGACCAGAATCTGGATAAGATTGAAGCTATCATCAAAGAATGTTTCATATCAGATGTCGTTGATGTGTTGGATCAGGGAAGCGTTTACATCATGACAAATTTTTCTATTGTTCCAAATATTGGGTCCAACAGGGTAACTCAGCATCGTTTCAAGTTGCTATTTCAAGAAGAAACTACTATCACCCCAGGAGTTCCTTTTTCAGCTTTAAATGATGGTTTCAGTTTCTGTCCAATATCTGAAATACTAGAAAAAAGAGGTGACTCTGACTATTTAATAGATTTTGTTGGAGTTATCACTGGTGTGCGTCCAGATAAAGAAATTAATTATTGTGGAAAAATGATTAAAGTTGTCATCTTGGAGCTTTATGCTGATGGGAAGAAGATTCAGTGCAATGTGTTTGGAAAAAGTTGTGAATGTTTGGAGTTTTCTATGCTAACTAAATTTCAGAGACCTCCTATAATTATTCTACAATCTTTTAAAATCAAAGTTTATGGAGTTTCTTTGCAAAATGTATTAAATATATCAAATATCCTTATCAACCCTGATTTGCAAGAAACTGTGCATTTTCTTGAAAGATGCATTCGCACAATTCAAATGATTCAAGAGAGTACTGAGGATGGTTTATTCTTTGTTGTAGCTAAAGTAAAAGAAATCTTTGGTGGTGCTAATTGGTGGCTGTTTTCATGTGTTTGTGGACATAGTCTTGATCAAGTGGATAATGTATTCCATTGCCAAGTTTGTGACAAAGATGTTGATAATGCTATTGCAAAGTATAGAGTTAGGATTGTTGTTGAAGATAGAAATGCAACTGCTGTCTTTGTTCTTATGGATTCTGCTGCAACTAAATTYTTTGGAAAGACATGTTCTTCTGCATTGATGGATCATGAGAAAGAACTGAATGATTTCAGTTATGCATTGTATCCTACTTTTTTTTATCTTTTTATTGGGAAAGAGCTAATTTTCAAAATTTCCTGCAAAAAAGTAAGCAACGAGCCATACACGGGGACATTCAAAGTTATTTCAATCTTGAATGACAATCTACCACATGTAGAATTGAAGCTTGATCCAAATATAAATAYTGGTATTCAAGCACCTATCTATACTCCCATATGTGAAGATTATCATCACTATGCAGAAGTTGAAAAATATAAAAGTCGAATTGCATGCGATGCTTTTATTCATGCTTGCAATGTTGATGACATGTTGCTTGATCCTTTTGCCGTGCGTTACTGTTGTTCTACTCCAGAGCCACTTGAGTGTGTTGACGCTATTCCAAGCTATCGGTTAAAGGTGGTGATTTCTCATGCAAGTGGTAGCAATGTATTCATTCTTCATGATCGTGAAGTTAGGCATATTATCAAGAAAGATTGTGGTGATTTGTTGAATGAAAAATCAAATTTCAAAGAGGATTTCAGTTATGCATTGTATCCTACCTTTTTTGATCTTTTTATTGGGAAAGAGCTYATTTTCAAAATTGACTGCAAAAAAGTAAGCAACGAGCCATACACTGGGACATTCAAAGTTATTTCAATCTTGAATGACAATCTACCACATGTTGAGTTGAAGCTTGATCCAAATATAAATACTGATTCATTCCAATCACGGAAATCAGACAATTCATATGATAACCTTGCTGCAATTTCCCTCTGTTACACACAAGAGCAGTACAATCTACCTACCACGCGAGGATACACCTTGGCACACTAG 2367 0.3481 MFIAWMLANRVYPEGKDLTYVEFPRHFVYVVDNREWKPRQRGFSIGRLSFVPPTAGELFYMRLLLNVQRGCTSFKSIRTVNGTTYDTFQEACSALGLLTDDNEFVEAIKEAALLGTGLQLRRLFVTLLLSASISRPLSVWNQTWVLIIFYIYFWFNFFKVVKQIHCERTLKKMHTLFDPIKCITPWRETWRLRVKVVRLWFHGNSVLEENDDGLLHLILIDQNLDKIEAIIKECFISDVVDVLDQGSVYIMTNFSIVPNIGSNRVTQHRFKLLFQEETTITPGVPFSALNDGFSFCPISEILEKRGDSDYLIDFVGVITGVRPDKEINYCGKMIKVVILELYADGKKIQCNVFGKSCECLEFSMLTKFQRPPIIILQSFKIKVYGVSLQNVLNISNILINPDLQETVHFLERCIRTIQMIQESTEDGLFFVVAKVKEIFGGANWWLFSCVCGHSLDQVDNVFHCQVCDKDVDNAIAKYRVRIVVEDRNATAVFVLMDSAATKFFGKTCSSALMDHEKELNDFSYALYPTFFYLFIGKELIFKISCKKVSNEPYTGTFKVISILNDNLPHVELKLDPNINXGIQAPIYTPICEDYHHYAEVEKYKSRIACDAFIHACNVDDMLLDPFAVRYCCSTPEPLECVDAIPSYRLKVVISHASGSNVFILHDREVRHIIKKDCGDLLNEKSNFKEDFSYALYPTFFDLFIGKELIFKIDCKKVSNEPYTGTFKVISILNDNLPHVELKLDPNINTDSFQSRKSDNSYDNLAAISLCYTQEQYNLPTTRGYTLAH* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0371 788 Pfam Domain of unknown function DUF223 217 311 IPR003871 -
Amo01g0371 788 SUPERFAMILY Nucleic acid-binding proteins 293 412 IPR012340 -
Amo01g0371 788 SUPERFAMILY Nucleic acid-binding proteins 423 566 IPR012340 -
Amo01g0371 788 CDD RPA1_DBD_C 414 578 IPR013955 -
Amo01g0371 788 Gene3D - 409 567 IPR012340 -
Amo01g0371 788 Gene3D - 610 736 IPR012340 -
Amo01g0371 788 CDD RPA1_DBD_A_like 191 280 - -
Amo01g0371 788 Gene3D - 177 283 IPR012340 -
Amo01g0371 788 PANTHER UNCHARACTERIZED 3 147 - -
Amo01g0371 788 SUPERFAMILY Nucleic acid-binding proteins 177 286 IPR012340 -
Amo01g0371 788 CDD RPA1_DBD_B_like 313 414 - -
Amo01g0371 788 PANTHER ATP-DEPENDENT DNA HELICASE 3 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0371 Amo-Chr1 5826764 5836939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0371 179 406 Core DNA Replication Machinery Family AT2G06510 21.610 3.93e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0371 - - ahf:112695694 397.897