Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0370 ATGGTTGATTTGATGTTTGAGAGAATGAGTGGAGTGGTTGATGTTATCATCCCTGGATATGAGGAAGATTTCAATTGTAAGATCGTTCCTCCACGTGAGGCCTGGAGGATCAAAGTTAGGATACTAAGGGCTTGGACTGTACCTAGCTTTGGTAATGCAGATGTTCCAAATTCAATGGAACTTATTCTGGTTGATGAAAATTCTACCAAAATCCAGGCCACTATAAGGAAGCAACTAATCCACAAGTTTAAAGATCATCTTCTTGAAGGCAGTTGTTATAAGATGAGCTATTTTGCTGTTGTTTCAAACCAAGGTTCTTATAGAGCTACAAAGCATGAGTTCAAACTCATTTTTCTGTTTCGTACAATAGTGACAACAATTCCTGATGATATAATACCCAAGTCTTGTTTTTCTATATATCCCTTTGAAGACATATTGCAAATGAGTCAGGATCATGACTATTTAGTTGATGTAATTGGTCTTTTGACATTGGTTGGGGAAGAGAAAAACTATGACAGGGATGGTAAAACGGTTAAGATGGTGGTTGTCGAACTTTCTTCACAAAAGATGATGCTGCGATGCACATTATTTGGAGAGTACGTGGACCAGTTAAATGATTTTCTTGCTTCTGGTTATGTTGAGCAACCGGTTGTCATTGTTCAACTTGCTAAGATTAAACTTTTTCGAGGTCAACCTAGTCTCCAGAATGTTATGAAAGCAACAAAAATTTACTTTAATCCTGATTTGTCAGAAGTTATTGATTTTCGAAAAAGCATGGTCGAACAAGGGATTAATGGCACTCAACCTTTATTCATTGCGAATGAGGGAAAATCTGTTTCATTGGAGGATGACTTCATGCGCTTAACTAGGCGATCCACAATAGATCAATTACATGATAACAAAGAGGATGGGAGTTTTGTTATTATGGGTACTATCACTGATATTGTTGAAGAGGGTTGTTGGTGGTATTCCACTTGTGTGTGTGAAAAGGCAGTTTATCCTGAGTCTGGGGTCTATTTCTGTGATGTTTGCATGCATCATGTGACAAATGTGATTCCAAGGTTCAGACTTAAAGTAGCAGTTTCTGATCATACTGGACAGGGCATATTCGTTTTGTTCGATCGTGAAATAGCTTATTTGCTTAAAAAAGCATGTGCTGACCTTTTTAATGAAGTCCAAAAGGAGCCAACTGTTCTGTGTGGAGATAGCTATCCTATTACATTTAAAACTTTAGAGGGTAAAAAAGTTTTACTAAAAGTAGATACCAAGTCCCTTGGTATAGACAAATACTTTGGAACCTTTCGTGTAAAAAGGATTTGTGATGACCCAACTATTATTTCTATGTTTGAGCTTGCTGAGAATGAGAACGAAGTGACACCTGTCAAGGATGCATGTGTTCCTGGGATTGGTTTGGACATAGGTGAACCCTCTTATACACAGCCTACCTCAAAAGATGTTAAGCTTTCAGTCTTGGATAAGGATGAAAGTGTTCCTGGTCTTGATGACATTTCGATAGATATGGACACTAATAGGAAATCTGTTGTTCCTCAAGTTTCTGGCGATGATGATGAGAATCAGGTCTTTAGTGATGAAGTTGGCTCATTGCTCAACTCAGGTGTTGAAGAAACTCAGGACTTCCTATCTCATCTTCTGGATAATTCGGACAACATTGATGTTTCTTCTATTTGCAATGATGGTGTGCGTTCCAAAGTGAAGAGAAACCTTGAATCAGATTTTCGGAAAGCCTTGGAGGAAACTGTTGGTCCTTCATCAAAGATGATCAAGGTTGAAGATAATTAG 1800 0.3806 MVDLMFERMSGVVDVIIPGYEEDFNCKIVPPREAWRIKVRILRAWTVPSFGNADVPNSMELILVDENSTKIQATIRKQLIHKFKDHLLEGSCYKMSYFAVVSNQGSYRATKHEFKLIFLFRTIVTTIPDDIIPKSCFSIYPFEDILQMSQDHDYLVDVIGLLTLVGEEKNYDRDGKTVKMVVVELSSQKMMLRCTLFGEYVDQLNDFLASGYVEQPVVIVQLAKIKLFRGQPSLQNVMKATKIYFNPDLSEVIDFRKSMVEQGINGTQPLFIANEGKSVSLEDDFMRLTRRSTIDQLHDNKEDGSFVIMGTITDIVEEGCWWYSTCVCEKAVYPESGVYFCDVCMHHVTNVIPRFRLKVAVSDHTGQGIFVLFDREIAYLLKKACADLFNEVQKEPTVLCGDSYPITFKTLEGKKVLLKVDTKSLGIDKYFGTFRVKRICDDPTIISMFELAENENEVTPVKDACVPGIGLDIGEPSYTQPTSKDVKLSVLDKDESVPGLDDISIDMDTNRKSVVPQVSGDDDENQVFSDEVGSLLNSGVEETQDFLSHLLDNSDNIDVSSICNDGVRSKVKRNLESDFRKALEETVGPSSKMIKVEDN* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0370 599 CDD RPA1_DBD_B_like 157 259 - -
Amo01g0370 599 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 37 389 - -
Amo01g0370 599 PANTHER REPLICATION FACTOR A 1, RFA1 37 389 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo01g0370 599 SUPERFAMILY Nucleic acid-binding proteins 28 130 IPR012340 -
Amo01g0370 599 CDD RPA1_DBD_A_like 36 124 - -
Amo01g0370 599 Gene3D - 280 444 IPR012340 -
Amo01g0370 599 SUPERFAMILY Nucleic acid-binding proteins 137 259 IPR012340 -
Amo01g0370 599 Gene3D - 26 129 IPR012340 -
Amo01g0370 599 SUPERFAMILY Nucleic acid-binding proteins 289 442 IPR012340 -
Amo01g0370 599 Pfam Replication factor-A C terminal domain 307 396 IPR013955 -
Amo01g0370 599 Gene3D - 131 267 IPR012340 -
Amo01g0370 599 CDD RPA1_DBD_C 296 423 IPR013955 -
Amo01g0370 599 Pfam Domain of unknown function DUF223 60 155 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0370 Amo-Chr1 5818067 5821245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0370 30 366 Core DNA Replication Machinery Family AT2G06510 23.204 9.41e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0370 - - ahf:112711209 1154.04