Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0355 ATGGGAAAAATACCACCTGCATTTCGATCCGCTGTTACAAACCCTCAATTCAGAAACCCATCTTCTCTAATTCCTCCGTCCTCTCCATCCTCCAAACCCCATCACTTTCCCAAGAAAATCCCTTCTCATTTTCCCGGAAAATCCCGAAAACCTAACAACCAGCAACAACCTCCGAAAACCCCCGTTCTCTTCAAATCCCCGAGCCTCCAAGAAGCCAAGACCGTCTTCAACTCCATAATCAAAACCTCCGATTCCGCAAATGCTTCCATTGACCCTCGATTCCACAATTCCCTTCTTCAATCCTACGCTTCAATCTCCACCTTTGACGATTCCGTCGCTTTTCTCCGCCACATGTCCGCTGCAAACCCTTCCTTCTCCCCCGACCGATCCACCTACCACATCCTCCTCTCCCAAACCTGCAACAACGATTCGCCTCCTGATTCCCTCTCCTCCCTTTCCCCAATTCATAAAACCCTAAATCTGATGGTCAAAGACGGCGTCTCCCCCGACAAATCCACCGCTGATGTCGCCGTGAGGTCGCTCTGTTCCGCCGGAAGGGTAGACCACGCTGTTGAATTGTTCAAAGAGCTTTCTTTGAAGCATTGTGTTCCAGACACTTACACTTTCAATTGCATTGTTAAACATCTATGTAAGTGCCGTAGCTTGAGTACTGTTTATGGATTCATTGATGAGATGCGTGATAGTTTCGGCTTTAAGCCTGATCTTGTTACTTACACGATTTTGATTGATAATGTGTGTAATACTAAGAACTTGAGGGAGGCTTTGAGGTTGGTTAGTGTGCTCAACGAGGAAGGGTTTAAGCCCGATTGCTTTTTATACAATACGATTATGAAAGGGTATTGTATGCTGAGTAGGGGGAGCGAGGCGATTGAGGTTTATAACAAGATGAAGGATGATGGGGTAGAGCCTGATCTTGTCACTTATAACACTTTGATTTTTGGGTTGTCGAAATGTGGAAGGGTTGTGGAAGCTAAAAAGTTGTTGCGAGTTATGGCGGAAAAGGGCTTTTTCCCCGACGAGGTGACTTATACTTCGCTGATGAATGGTATGTGCAGGAAAGGGGATGCACCGGGTGCGTTGGTGTTGTTGGGAGAAATGGAGGACAAGGGGTGCTGTCCGAATTCGTGCACGTATAACACCCTGCTACATGGGTTATGTAAGTCTAGGTTGTTGGAGAAGGCAATGGAATTGTATGGAGTGATGAAATCAGGTGGTTTGAAGCTTGAGACAGCTTCTTATGCCACGTTTGTTAGGGCACTGTGTAGGGATGATAGAATTGCTGAGGCCTATGAAGTGTTTGATTATGCAGTTGAAAGCAAGAGTTTGACGGATGTTGTTGCTTACTCGACATTGGAGAGCACGCTTAAGTGGCTCAAGAAGGCAAAAGAAAAAGAGAAGGAAAGAAGAGGAGAGAAAATCTCAGATTGGCACAGGCAGCAGTACGACACAGCCATTGCAAAGAAGAAGAATTGTCAAAGAGAGTCAGTTTTCCACTGTTCTTCCCTCGCACTTTCTGCTTGGATGCTGCATTGTTTTTTTATTTTTTTGGTGGGATTTGAACCCCAATACTTGCTTAAACAAATTAGTGAATTAACCACTAGATCAACCCAACTTTTTCTATGCCTAATATTCAGTCTTGTCCTTATCTTCTTTGGTATTGCAACATTGATTATCTTCCTTATCATAAAACCAAGAACCCCCATTTTTGATATTCCAAATGCAAACCTCAATTTGGTGTACTTTGACTCTCCAAATTACATCAATGGTGACTTCACCCTCCTTGCAAACTTCACCAACCCCAACAAAAAAATCAATGTCCTTTTCGAGTCTTTAGACGTCGAGCTCTTCTTCTCTGAGAGGCTCATATCGGCACAGTCGATAGAGCCGTTCGCTCAGAGAAGAAGAGAAAGCAAGTTGCAATCAGTGAACTTCATATCTAGCTTGGTGTTTTTGCCTCAGGATATTGGTGTGAAGCTTCAAAAGCAAGTTCAGAACAATAGGGTAATCTACAATGTGAAGGGAACATTTAGAGTGAAAATCACCATTGGTCTAATTCATGTATCTTATTGGTTGCATAGTAGATGCCAGATTGAGATGACTGGTCCACCAACTGGAGTATTAGTAGCAAGAAACTGCATAACAAAGAGATGA 2172 0.4378 MGKIPPAFRSAVTNPQFRNPSSLIPPSSPSSKPHHFPKKIPSHFPGKSRKPNNQQQPPKTPVLFKSPSLQEAKTVFNSIIKTSDSANASIDPRFHNSLLQSYASISTFDDSVAFLRHMSAANPSFSPDRSTYHILLSQTCNNDSPPDSLSSLSPIHKTLNLMVKDGVSPDKSTADVAVRSLCSAGRVDHAVELFKELSLKHCVPDTYTFNCIVKHLCKCRSLSTVYGFIDEMRDSFGFKPDLVTYTILIDNVCNTKNLREALRLVSVLNEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNKMKDDGVEPDLVTYNTLIFGLSKCGRVVEAKKLLRVMAEKGFFPDEVTYTSLMNGMCRKGDAPGALVLLGEMEDKGCCPNSCTYNTLLHGLCKSRLLEKAMELYGVMKSGGLKLETASYATFVRALCRDDRIAEAYEVFDYAVESKSLTDVVAYSTLESTLKWLKKAKEKEKERRGEKISDWHRQQYDTAIAKKKNCQRESVFHCSSLALSAWMLHCFFIFLVGFEPQYLLKQISELTTRSTQLFLCLIFSLVLIFFGIATLIIFLIIKPRTPIFDIPNANLNLVYFDSPNYINGDFTLLANFTNPNKKINVLFESLDVELFFSERLISAQSIEPFAQRRRESKLQSVNFISSLVFLPQDIGVKLQKQVQNNRVIYNVKGTFRVKITIGLIHVSYWLHSRCQIEMTGPPTGVLVARNCITKR* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0355 723 MobiDBLite consensus disorder prediction 1 67 - -
Amo01g0355 723 MobiDBLite consensus disorder prediction 47 63 - -
Amo01g0355 723 Pfam PPR repeat 419 441 IPR002885 -
Amo01g0355 723 Pfam PPR repeat 178 198 IPR002885 -
Amo01g0355 723 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 472 - -
Amo01g0355 723 Pfam PPR repeat family 275 324 IPR002885 -
Amo01g0355 723 Pfam PPR repeat family 204 254 IPR002885 -
Amo01g0355 723 Pfam PPR repeat family 345 394 IPR002885 -
Amo01g0355 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Amo01g0355 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Amo01g0355 723 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 472 - -
Amo01g0355 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Amo01g0355 723 Gene3D Tetratricopeptide repeat domain 294 520 IPR011990 GO:0005515
Amo01g0355 723 Gene3D Tetratricopeptide repeat domain 61 292 IPR011990 GO:0005515
Amo01g0355 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 346 380 IPR002885 -
Amo01g0355 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Amo01g0355 723 TIGRFAM PPR: pentatricopeptide repeat domain 279 311 IPR002885 -
Amo01g0355 723 TIGRFAM PPR: pentatricopeptide repeat domain 178 206 IPR002885 -
Amo01g0355 723 TIGRFAM PPR: pentatricopeptide repeat domain 348 382 IPR002885 -
Amo01g0355 723 TIGRFAM PPR: pentatricopeptide repeat domain 383 414 IPR002885 -
Amo01g0355 723 TIGRFAM PPR: pentatricopeptide repeat domain 313 347 IPR002885 -
Amo01g0355 723 TIGRFAM PPR: pentatricopeptide repeat domain 243 277 IPR002885 -
Amo01g0355 723 TIGRFAM PPR: pentatricopeptide repeat domain 207 241 IPR002885 -
Amo01g0355 723 Pfam Late embryogenesis abundant protein 605 702 IPR004864 -
Amo01g0355 723 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0355 Amo-Chr1 5558564 5562532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0355 166 480 Glycosyltransferase AT1G05670 31.447 3.21e-42 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0355 - - adu:107458955 872.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0304 11 4615628 4620298 Amo01g0355 01 5558564 5562532 hybridization
Amo01g0355 01 5558564 5562532 Amo07g0206 07 1937176 1938184 PCT
Amo07g0206 07 1937176 1938184 Amo01g0355 01 5558564 5562532 PCT