Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0354 ATGGATACTAAATCAGCTGTTGATTTGATGGAGTCTTCCTCCGAGGTTCACTTTTCTGGATTTCACATGGATGGTTTTGAGCAAAGAAAGTCAGGCATGGAACAACCGACAACATCGGCGACTGACATGTATAAACAACCATTTGTCATAGGTGTTGCTGGTGGTGCAGCATCAGGCAAGACTGCAGTTTGTGATATGATTATTCAGCAACTTCATGATCAACGAGTTGTATTAGTTAATCAGGATTCTTTTTACCATAACTTGACTGAAGAGGAACTTGCTCGTGTACAGGATTACAACTTTGACCATCCTGATGCTTTTGATACTGAGCTATTGCTATGTGTTATGGACAAGTTGAAGCGTGGTGAGGCAGTAGATATTCCAAAGTACGACTTCAAGAGTTACAAGAGTGATGTGTATCCAAAAAGAAGGGTAAACCCCTCAGATGTTATAATTTTGGAAGGGATCCTTGTTTTCCATGATCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGATACAGATGCTGATGTTCGTCTGGCGAGAAGGATTAGACGAGATACTGGCGAGAAGGGTCGGGATATTGCCGTAGTTCTTGATCAGTATTCGAAATTTGTGAAACCAGCTTTTGATGATTTTATTCTCCCTACAAAGAAGTATGCTGATATCATTATACCGCGTGGGGGAGATAATCATGTAGCCATTGACCTGATTGTACAGCATATCCGCACGAAGCTTGGTCAACATGACCTGTGTAAAATATATTCCAATTTATATGTCATTCAGTCAACTTTTCAGATACGGGGCATGCATACCCTGATACGTGATGCTCAGATAACAAAGCATGATTTTGTATTTTATTCTGACCGTTTGATTCGTTTGGTTGTTGAACATGGGCTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATCACTCCCACTGGTTCTGTATACACTGGCGTGGACTTTTGTAAGAGATTGTGTGGTGTCTCTGTCATCAGGAGTGGGGAGAGTATGGAGAATGCTTTACGAGCATGCTGTAAAGGTATCAAGATCGGGAAAATTCTAATTCACAGAGAAGGTGACAACGGTCAGCAGCTAATATACGAAAAGCTTCCAAACGATATCTCGGATAGGCACGTTTTACTGTTGGATCCTATCCTTGGCACAGGTAATTCGGCTGTACAAGCGATCTCTTTACTTATAAGAAAGGGTGTACCGGAGTCCAACATTATATTTCTCAACCTGATATCTGCACCTCAAGGTGTTCATGTGGTCTGCAAAAAGTTTCCTAGAATAAAAATAGTGACATCTGAGATTGAGATTGGTTTGAATAAAGATTACCGCGTCATACCGGGCATGGGTGAGTTCGGCGACCGGTACTTCGGAACAGATGATGATGAGCAGTTGGTGGTTCCTTCACAGTAG 1434 0.4177 MDTKSAVDLMESSSEVHFSGFHMDGFEQRKSGMEQPTTSATDMYKQPFVIGVAGGAASGKTAVCDMIIQQLHDQRVVLVNQDSFYHNLTEEELARVQDYNFDHPDAFDTELLLCVMDKLKRGEAVDIPKYDFKSYKSDVYPKRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTGEKGRDIAVVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYSNLYVIQSTFQIRGMHTLIRDAQITKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIRKGVPESNIIFLNLISAPQGVHVVCKKFPRIKIVTSEIEIGLNKDYRVIPGMGEFGDRYFGTDDDEQLVVPSQ* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0354 477 Gene3D - 251 466 IPR029057 -
Amo01g0354 477 PANTHER URIDINE KINASE 15 468 - -
Amo01g0354 477 CDD UMPK 49 247 IPR000764 -
Amo01g0354 477 SUPERFAMILY PRTase-like 250 467 IPR029057 -
Amo01g0354 477 Pfam Phosphoribulokinase / Uridine kinase family 49 235 IPR006083 GO:0005524|GO:0016301
Amo01g0354 477 CDD PRTases_typeI 324 439 IPR000836 -
Amo01g0354 477 Gene3D - 43 250 IPR027417 -
Amo01g0354 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 240 IPR027417 -
Amo01g0354 477 PRINTS Uridine kinase signature 47 64 - -
Amo01g0354 477 PRINTS Uridine kinase signature 77 88 - -
Amo01g0354 477 PRINTS Uridine kinase signature 122 137 - -
Amo01g0354 477 PRINTS Uridine kinase signature 179 189 - -
Amo01g0354 477 PRINTS Uridine kinase signature 193 204 - -
Amo01g0354 477 PRINTS Uridine kinase signature 215 228 - -
Amo01g0354 477 PANTHER URIDINE KINASE 15 468 - -
Amo01g0354 477 Pfam Uracil phosphoribosyltransferase 265 466 - -
Amo01g0354 477 TIGRFAM udk: uridine kinase 46 247 IPR000764 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0354 Amo-Chr1 5550726 5556892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0354 1 469 PRT Gene Family AT4G26510 83.864 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0354 K00876 - gmx:100527893 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0305 11 4621874 4627907 Amo01g0354 01 5550726 5556892 hybridization
Amo01g0354 01 5550726 5556892 Amo07g0209 07 1943929 1946236 PCT
Amo07g0209 07 1943929 1946236 Amo01g0354 01 5550726 5556892 PCT