Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0340 ATGATGAGTTCTGTTTCTTCTGAAACACAACAAAATAGGCCTTCTTTGATGACTAGAATGGCCATGAGAATATCGAGATCGAGATGGTTCACATTCTTGAGGAGAGTATTCCACTACCAAAACGGGCCGAGTTCTACTTCGTCAGAACTCGGCTCGAACCCTTTCAATTCCAGCACCTGGATGGGGCTGGAATTGGTTGCATTGGTGGTTCAAATAACTAGCACGACTCTCACTCTTGCAATTTCCAAGAGTGAGAGACCAATTTGGCCTATGAGGATTTGGGTAGCTGGTTATGACATTGCTTGTGTCCTTAATTTGTTGCTTCTTTGTGGCCGCTACCATCAAATTCATGTCACCACTCATAGAGATGTTCTTAGCGATTTGGAGCAGCAGAGATACAATAATGGGGATGCAAGTTTACAGAGAAGGGCACATTTGATGAACAAATGCCGGAGTTCATTGGAGCTTTTCTTTGCAATGTGGTTTGTGATGGGAAATGTTTGGGCCTTTGACTCACGGTTTGGGTCATTCCAAGAAGCCCCAAAACTCAATATTCTATGCATAATTTTGCTCTCTTGGAATGCAATATGTTACTCTTTCCCTTTCCTATTGTTCTTGTTGCTTTGTTGCATTGTCCCTTTGATTAGTACCCTCCTTGGTTACAACATGAACATGGGATCTAATGCTAAGGGTGCCTCTGAGGATCAAATCTCACAGATTCCAAGTTGGAGATATAAACAAGTTCATGATCATCATGCCTTGGATCATTGCAATCATAATGATTGTTCTCAAACATCCATAAATGAGGATCAAGAGTGTTGCATTTGTTTGAACAAGTACAAAGACAAAGAAGAAGTTAGACAATTGCCCTGTTTCCATCTCTTCCATAAAAAATGTGTGGATCAATGGCTAAGAATTATATCATGCTGCCCTCTTTGTAAACAAGGATTACAAAGGTAG 960 0.4083 MMSSVSSETQQNRPSLMTRMAMRISRSRWFTFLRRVFHYQNGPSSTSSELGSNPFNSSTWMGLELVALVVQITSTTLTLAISKSERPIWPMRIWVAGYDIACVLNLLLLCGRYHQIHVTTHRDVLSDLEQQRYNNGDASLQRRAHLMNKCRSSLELFFAMWFVMGNVWAFDSRFGSFQEAPKLNILCIILLSWNAICYSFPFLLFLLLCCIVPLISTLLGYNMNMGSNAKGASEDQISQIPSWRYKQVHDHHALDHCNHNDCSQTSINEDQECCICLNKYKDKEEVRQLPCFHLFHKKCVDQWLRIISCCPLCKQGLQR* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0340 319 Pfam Ring finger domain 272 314 IPR001841 -
Amo01g0340 319 SUPERFAMILY RING/U-box 260 317 - -
Amo01g0340 319 ProSiteProfiles Zinc finger RING-type profile. 273 314 IPR001841 -
Amo01g0340 319 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 318 - -
Amo01g0340 319 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 8 318 - -
Amo01g0340 319 CDD RING-H2_RNF111_like 272 314 - -
Amo01g0340 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 318 IPR013083 -
Amo01g0340 319 SMART ring_2 273 313 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0340 Amo-Chr1 5396157 5399181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0340 19 317 C3H Transcription Factor Family AT4G26580 64.120 1.43e-131 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0340 - - ahf:112791228 657.907