Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0336 ATGAGTTCCCAGGTAATGGAAACTAGAAGAGAGGATGCTGAAATTGAAGACATTTCAATAATGTCACCTCCATTAGTGGGTTCTATGAAAATTGAAGGGTGCAATAATAATGAGTTTATGTCTCATTCATACTTTCACAACAACTGCTCTGAGATTGATATTCAAATTGATGATTCCAGTTTCAATCAAATTGGCCCTCTCCCCATTTATCTCAAGTTTGAAGATGTAGAGTTTAAAGTGAGAAACAATACACGAGCAGCTTCGAAAAACCCTGTGAAGAGAATAGTATCAAAGGTAAGTAGAGAAAATAAGAATAATAATGGGGAAGGTGATGATAAATACAAGAAGATTTTGAAGGGTATAACAGGAAGCATTGGACCTGGTGAAATTCTAGCACTAATGGGTCCTTCTGGGAGTGGCAAAACAACCTTGTTGAGAGTCATAGGAGCAAGATTACTTGACAATGTAAAAGGAAAAATCACCTACAACGATGTTCGTTATACGCCAGCTGTCAAGAGGAGGATTGGATTTGTGACACAAGAGGATATTCTTTTTCCACAATTAACTGTTGAAGAAACATTAGTTTTCTCCGCATTATTAAGGCTACCAACTAATATGAGCAAGCAGCAAAAATATGCAAAAGTGGACACCACTATCAAGCAGCTAGGCCTTGAAAGATGTCGCAACACAAAAATAGGAGGGGGATATCTAAAAGGCATATCAGGAGGGGAAAGGAAGAGAACAAGCATAGGTTATGAAATTCTTGTTGATCCTTCATTGCTACTGCTTGATGAACCAACTTCAGGCCTTGATTCTACCTCAGCAAACAAACTTCTTGTCACTCTTCAGGGGCTTGCCAAGGCAGGAAGGACCATAATTACAACAATACATCAGCCATCAAGCAGAATCTTTCACATGTTTGACAAACTTCTTCTGATATCAGAAGGCTATCCGGTTTACTATGGTAAGGCCAGAGAATCAATGGACTACTTCTCTTCCTTGAGGTTCATGCCGGAGATACCGATGAATCCGGCCGAGTTCTTGCTCGACTTGGCTACCGGACAAGTCAACGATATAAGTTTTCCAGCCGAAGTTTTGCAAGATCAACTAACTAATGACCCTTCTAGAGCAGTTATTAATTATCTAAAAGTAAAGTATAAAGCTTTGTTGGAGCCAAAGGAAAAGGAAAACCATGGAGCAGCAACAACAGCAGAGCATCTTCAACAAGCAATTCAAGTTAAGAAGGAGTGGACATTGAGTTGGTTGGACCAATTTGTGATTCTTTCTAGGAGAACATTCAGAGCAAGATGCAAGGACTATTTTGATAAGTTAAGGCTAGTTCAAGCACTTGGCATTGCACTCTTGTTGGGATTACTTTGGTGGAAATCCTCAACCAACACTGAGGCTCAACTCAGAGATCAGGTTGGTTTAATGTTCTATATATGTATATTCTGGACATCTACATGCATTTTTGGAGCAGTGTACGTGTTTCCATTCGAAAAGATATACTTGATAAAAGAAAGGAAAGCAGACATGTATAGATTAAGCGTATACTACGCATGCAGCACGCTGTGTGACATGGTGGCCCATGTTTTCTATCCCACTTTCTTCATGATCATTGTCTATTTCATGGCCGGCTTCAAGAGGACCGTCGCCTGCTTCTTCTTGACTCTCTTCTCCGTTCTGTTAATCGCCGTCACCAGTCAGGGCGCTGGAGAATTGTTTGGAGCTGCAGTTATGAGTATTAAAAGAGCAGGCATGGCTGCTTCTTTGGTGCTTATGTTGTTCCTTCTTACTGGTGGCTACTATGTCCAGCACATACCAATGTTCATGCAGTGGTTGAAGTATTTATCCTACTTATTCTACGGATTCAGGCTTCTTCTAAAAGTGCAGTATTCCGGAGACCAATTATATGACTGTGAAAGTGAGGGAGGGTGCAGACCCTTGCAAAGTTCACCAACATTTAGCACTGTTAACTTGAAAGGTGGCTTGAAAGAAGTTTGGGTTGTGCTAGCCATGGCTATGTGCTTCAGGTTCTTGGCTTACATTTGCCTCCGCAGAAGAATTGATGCCTATAAATAA 2082 0.4068 MSSQVMETRREDAEIEDISIMSPPLVGSMKIEGCNNNEFMSHSYFHNNCSEIDIQIDDSSFNQIGPLPIYLKFEDVEFKVRNNTRAASKNPVKRIVSKVSRENKNNNGEGDDKYKKILKGITGSIGPGEILALMGPSGSGKTTLLRVIGARLLDNVKGKITYNDVRYTPAVKRRIGFVTQEDILFPQLTVEETLVFSALLRLPTNMSKQQKYAKVDTTIKQLGLERCRNTKIGGGYLKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSTSANKLLVTLQGLAKAGRTIITTIHQPSSRIFHMFDKLLLISEGYPVYYGKARESMDYFSSLRFMPEIPMNPAEFLLDLATGQVNDISFPAEVLQDQLTNDPSRAVINYLKVKYKALLEPKEKENHGAATTAEHLQQAIQVKKEWTLSWLDQFVILSRRTFRARCKDYFDKLRLVQALGIALLLGLLWWKSSTNTEAQLRDQVGLMFYICIFWTSTCIFGAVYVFPFEKIYLIKERKADMYRLSVYYACSTLCDMVAHVFYPTFFMIIVYFMAGFKRTVACFFLTLFSVLLIAVTSQGAGELFGAAVMSIKRAGMAASLVLMLFLLTGGYYVQHIPMFMQWLKYLSYLFYGFRLLLKVQYSGDQLYDCESEGGCRPLQSSPTFSTVNLKGGLKEVWVVLAMAMCFRFLAYICLRRRIDAYK* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0336 693 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 334 IPR027417 -
Amo01g0336 693 SMART AAA_5 127 318 IPR003593 -
Amo01g0336 693 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 12 689 - -
Amo01g0336 693 Pfam ABC transporter 118 268 IPR003439 GO:0005524
Amo01g0336 693 Pfam ABC-2 type transporter 424 632 IPR013525 GO:0016020|GO:0140359
Amo01g0336 693 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 99 340 IPR003439 GO:0005524
Amo01g0336 693 CDD ABCG_EPDR 113 322 - -
Amo01g0336 693 Gene3D - 105 335 IPR027417 -
Amo01g0336 693 PANTHER ABC TRANSPORTER G FAMILY MEMBER 26 12 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0336 Amo-Chr1 5358917 5365017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0336 116 301 Calmodulin-binding Proteins AT2G36910 30.526 1.08e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0336 K05681 - gmx:100806094 1091.26