Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0316 ATGGGAACCTGCATGGAGAATTTTAATGAGGAGGAACACATTTTTCGCAGTAAATTCAAGCCGGTCCAAGTTCCGGACGACGTGACGCTGCCGGAATTCGTGCTCGAAAACGCCGAATTATACGCCAACAAGGTTGCATTTGTGGATGGTGTGAGTGAGAAAGCTATGACTTATAGTGAGGTGGTGAGAGACACAAAGAGATTGTCAAAGGCATTAAGGTCTCTTGGTTTGAGGAAGGGGAATGTGGTGATTGTGGTGCTTCCAAATGTGGTAGAATATGGAGTCATTGCTTTGGGAATAATGGCTGCTGGTGGTGTGTTCTCAGGAGCAAATCCAGCATCACATGTTTCAGAGATTAAGAAGCAAGTAGATTCTGCTGATGCCAAATTAATTGTCACAGATTCTACAATATATGATAAGGTGAAAGCTCTAGAGTTGCCTGTAATTGTGCTAGCTGATGAGCCAATTGAGGAAGCTATGAACTACAAAAAACTACTTGAAGCGGCGGACCGCGCCGGCGACGATTCGGCTAAAGAACCAATTCATCAGAATGATCTATGCGCCATGCCATTTTCATCAGGCACCACAGGGCTCTCAAAGGGTGTGATGCTTACACACAGAAACTTAGTAGCAAATCTTTGCTCAACACTCTTCGGTGTGGGACAAGAAATGATTGGCAATGTGACAACACTAGGACTAATCCCATTCTTTCACATCTATGGCATAACTGGAATATGTTGTGCCACTCTTAGGAACAAAGGSAAAGTTGTGGTTATGGGAAGGTATGATTTGAAGACATTTATTACTGCATTGATCAAACATGAGGTCAATTTTGCACCAATTGTGCCCCCAATTATTCTTGGATTGGTGAAGAATCCAATAGTGGATGAATTTGATCTTYGCAAGCTTAAACTCCAGGCTATTATGACTGCAGCTGCTCCACTTGCACCAGAAGTCCTTAATGCATTTAAACAAAAGTTTCCTGGTGTTGTTGTCCAAGAGGCATATGGACTAACTGAGCATAGCTGCATCACACTTACCCATGCAATAAAAGACGCTGGGGTTCTACACAAAAATTCAGTGGGGTTCATCCTCCCAAATTTGGAAGTTAAATTTATTGATCCTGATACTGGTCGATCCCTCCCAAGGAACACACCTGGGGAAATTTGTGTCAGAAGCCAATGTGTAATGCAAGGTTACTATAAACAGGTTGATGAAACTGCTCATACAATTGACAAGGATGGATGGCTTCACACTGGGGATGTAGGATACATAGATGATGAAGAGAATATATTTATCGTTGATCGCATCAAGGAGTTAATTAAATACAAAGGATTCCAAGTAGCTCCTGCTGAGTTAGAGGCCATTTTGTTATCTCATCCGTCGGTAGAAGATGCTGCAGTTGTGCCGTTGCCAGATGAAGAAGCAGGGGAAATCCCAGCTGCGAGTGTTGTCGTGAGCCGCGGCGCAAGAGTGACCGAAAAGGAAATCATGGACTATGTTGCTTCAAATGCTGCTCACTACAAGAAAGTGAGGGTGGTGCACTTTGTAGAAACCATACCAAAATCACCTTCTGGCAAGATAATGAGAAGGCTTATCAAAGAGAGGATGGTGAAAAAAATGAAGACAAACTCCACACCAAAATCCAACATTTCTTAA 1659 0.4286 MGTCMENFNEEEHIFRSKFKPVQVPDDVTLPEFVLENAELYANKVAFVDGVSEKAMTYSEVVRDTKRLSKALRSLGLRKGNVVIVVLPNVVEYGVIALGIMAAGGVFSGANPASHVSEIKKQVDSADAKLIVTDSTIYDKVKALELPVIVLADEPIEEAMNYKKLLEAADRAGDDSAKEPIHQNDLCAMPFSSGTTGLSKGVMLTHRNLVANLCSTLFGVGQEMIGNVTTLGLIPFFHIYGITGICCATLRNKGKVVVMGRYDLKTFITALIKHEVNFAPIVPPIILGLVKNPIVDEFDLXKLKLQAIMTAAAPLAPEVLNAFKQKFPGVVVQEAYGLTEHSCITLTHAIKDAGVLHKNSVGFILPNLEVKFIDPDTGRSLPRNTPGEICVRSQCVMQGYYKQVDETAHTIDKDGWLHTGDVGYIDDEENIFIVDRIKELIKYKGFQVAPAELEAILLSHPSVEDAAVVPLPDEEAGEIPAASVVVSRGARVTEKEIMDYVASNAAHYKKVRVVHFVETIPKSPSGKIMRRLIKERMVKKMKTNSTPKSNIS* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0316 552 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Amo01g0316 552 Gene3D - 439 543 IPR045851 -
Amo01g0316 552 Gene3D - 12 438 IPR042099 -
Amo01g0316 552 CDD 4CL 24 531 - -
Amo01g0316 552 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 540 - -
Amo01g0316 552 Pfam AMP-binding enzyme 36 443 IPR000873 -
Amo01g0316 552 Pfam AMP-binding enzyme C-terminal domain 452 527 IPR025110 -
Amo01g0316 552 PANTHER 4-COUMARATE--COA LIGASE-LIKE 1 7 540 - -
Amo01g0316 552 SUPERFAMILY Acetyl-CoA synthetase-like 13 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0316 Amo-Chr1 5085604 5089626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0316 5 538 Monolignol Biosynthesis Gene Families AT1G62940 71.933 0.0 774
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0316 K01904 - gmx:100811418 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0346 11 5453694 5458728 Amo01g0316 01 5085604 5089626 hybridization