Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0274 ATGCACCTTGCAACTGTTGATGATATTCTCCTCCAACCGCTTTTCACGCGTTATGTATCTGCTTCGTTGAACCTAATTCTGTTAATTGCGCTGCTTCTGTCATGGATATGGGAGAAAGTTCATGCGAATGTGAACCATAGAGAAAACAATGAAAGAATTCGATTACGTAGTGATGGATTCTTGTACTTCAAACAAGGTCCACTTTTTAGCTTAGCTATTTGTGTGTTCAACCTTGTGCTGTGCTTGCTAACCTACTTTTACTTGTATGAAAATGATGGTGGTACTGGTTCCTCAAACGAAGTTATTGTTGCAATTTCTGATTTTGCTCTTAGATCACTTGCTTGGGCTGTTGTTTGTGGTTATTTGCAATTTGGAAGCTCCGGTTCTTGGGGACATTTCCCCTCAAGTTTCTTGAGGATTTGTTGCTGGGTATATGCTGTTGTTTCCTTTTGTTGCATTATAATAGACTTTATAATCTATGAAAAGCAAGCTTTCTTGCCGATTATGTATCTTGTTTCCGATATAAGTGCTTTTATTAGTGCTTTATTTCTGTGTTATTTGGGGTTTCCCCGAAACCATGTTGTTAAGAATGCCCCTCTTGAAGAAGCCCTTTTGAATGATGAATCTTTGGTGAGGAACGGTTGTAATCGCAATGAAACCAGAGGAGATGGAAATTCATTGAGCTATTACAATGCTGGATTCTTTAGTTTTCTTACATTCTCTTGGTTGAGTCCATTGATATCTCTAGGCAATAACAAGGCTTTAGATATCGAGGATCTTCCTGTTCTTCATATCAATGATAGTGCCTATGGGGCTTTTCCAAATCTTAGGGACAAGCTTGAGTCACAATGTGGTGATGATGGGAAAGTAACCACTTTTAAGTTGGTTAAGGCAATGTTCTTGTCAACATGGCAGCTGATCTTACTGTCAGCCTTATTTGCATTCGTGTACACTTGTGCTTCTTATGTTGGTCCTTATTTGATTGATTTCCTTGTTCAATACCTCAATGGGGAGCAAATGTTTGAAAACGAAGGCTATGTTTTGGTATTGGCATTTGCTGTTGGTAAGTTTGTGGAGTGCCTCTCGCAGAGACATTGGATGTTCAGGTTCCAGCAGATTGGGGTTAGGATACAATCAATGTTGGTGGGGACGATCTATGCTAAAGGTTTGAAGCTTTCGTGTAAATCGAAGGATGCTCATAGTAGCGGAGAAATCGTGAACTTGTTGACTGTTGATGCTTCAAGGGTTGGTGAATTTTGTTGGTACATGCATGATCCATGGGTGGCTGTTTTGCAAGTTGCTTTGGCCTTGTTGATTCTGTATCGGAGTGTTGGGCTTGCTTCAATTGCTGCTTTTGTTGCCACCGTAATTGTGATGTTGCTAAACATGCCAGTGGCATCATTGCAAGAAAAATACCAAAATAAGTTAATGGAGTTCAAAGACAAACGAATGAAGTCAACGTCTGAGATCTTAAAGAATATGAGGATTCTGAAACTGCAAGCTTGGGAGATGAAGTTCTTAGAGAAGATCATTCAGCTTAGGAAGGCTGAGGAGATATGGCTAAAGAAATTTGTCATTGGTTCAGTGATTATTAGATTTCTCTTCTTTAATGCCCCAACTTTTGTTGCTGTGGTTACTTTTGGTACATGTGTTCTTATGGGCATACCACTTGAATCAGGGAAGATCTTATCTGCACTCGCAACTTTCCGAATTCTTCAAATTCCCATATATAGCCTCCCTGACACAATTTCAATGATAGCACAAACTAAGGTCTCACTTGATAGGATCACATCATTTCTTTGTCTAGATGACTTGCAAGCCAATGCAGTAGAGAAACTTCCGCATGGTAGTTCTGATTTAGCAGTTGAATTTATAGATGGAAATTTCTCATGGGATTCCTCTTCCTCTAGTACTACTCTGGCGAACATAAATCTCAAAGTTTTTCATGGCATGAGGGTTGCTGTTTGTGGCACTGTTGGATCTGGAAAGTCAAGTTTACTTTCTTGTGTGATTGGTGAAGTCCCAAAGCTATCTGGGACCATTAAAGTGTGTGGAACAAAGGCTTATGTTTCTCAGTCGCCATGGATACAAAGTGGTAAGATAGAAGATAACATACTATTTGGCAAAGAGATGGACAGGGAAAAGTATGAGAAGGTACTAGAAGCATGTTCCTTAACAAAAGACCTAGAGGTTCTATCATTTGGTGACCAGACTATTGTTGGTGAGAAAGGAATCAATTTGAGTGGTGGACAGAAGCAAAGATTACAAATAGCTCGCGCTCTTTACCAAGATGCTGATATATACCTGTTTGATGACCCTTTCAGTGCTGTGGATGCTCATACAGGATCTCATCTTTTTAAGGAGTGTATACTCGGCCTTTTACAAACAAAAACTGTGATATACATTACTCATCAGATAGAGTTCTTACCTGATGCTGATCTAATATTGGTCATGAAAGATGGAAGGATAACTCAGTCTGGAAAATACAATGACATTCTCAAGTCAGGCACTGATTTTATGGAACTCGTAGGGGCACATCAGGAAGCTTTGTCTTCAATTAAATCTTTAGAGAGAAGGACTTCAAGTAAATCTTTAGAGAGAAGGCTTTCGAGTAAATCTTTTGAGAGAAGTCCCACGTCTAAGACATTAGGTCTCACCGTGGAGGATAGTGATTCACTAAGTTCTTTTGGAGAGCAAGACTTGGAAAACATTGATGATCAAAATGGTAAACCAGATGAAATAGTTGATAAAAGGCCAACTTGTTCAAGACGAAGAACGAGAAAAGGGTAG 2790 0.3946 MHLATVDDILLQPLFTRYVSASLNLILLIALLLSWIWEKVHANVNHRENNERIRLRSDGFLYFKQGPLFSLAICVFNLVLCLLTYFYLYENDGGTGSSNEVIVAISDFALRSLAWAVVCGYLQFGSSGSWGHFPSSFLRICCWVYAVVSFCCIIIDFIIYEKQAFLPIMYLVSDISAFISALFLCYLGFPRNHVVKNAPLEEALLNDESLVRNGCNRNETRGDGNSLSYYNAGFFSFLTFSWLSPLISLGNNKALDIEDLPVLHINDSAYGAFPNLRDKLESQCGDDGKVTTFKLVKAMFLSTWQLILLSALFAFVYTCASYVGPYLIDFLVQYLNGEQMFENEGYVLVLAFAVGKFVECLSQRHWMFRFQQIGVRIQSMLVGTIYAKGLKLSCKSKDAHSSGEIVNLLTVDASRVGEFCWYMHDPWVAVLQVALALLILYRSVGLASIAAFVATVIVMLLNMPVASLQEKYQNKLMEFKDKRMKSTSEILKNMRILKLQAWEMKFLEKIIQLRKAEEIWLKKFVIGSVIIRFLFFNAPTFVAVVTFGTCVLMGIPLESGKILSALATFRILQIPIYSLPDTISMIAQTKVSLDRITSFLCLDDLQANAVEKLPHGSSDLAVEFIDGNFSWDSSSSSTTLANINLKVFHGMRVAVCGTVGSGKSSLLSCVIGEVPKLSGTIKVCGTKAYVSQSPWIQSGKIEDNILFGKEMDREKYEKVLEACSLTKDLEVLSFGDQTIVGEKGINLSGGQKQRLQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECILGLLQTKTVIYITHQIEFLPDADLILVMKDGRITQSGKYNDILKSGTDFMELVGAHQEALSSIKSLERRTSSKSLERRLSSKSFERSPTSKTLGLTVEDSDSLSSFGEQDLENIDDQNGKPDEIVDKRPTCSRRRTRKG* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0274 929 MobiDBLite consensus disorder prediction 867 929 - -
Amo01g0274 929 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 622 845 IPR003439 GO:0005524
Amo01g0274 929 CDD ABC_6TM_ABCC_D1 309 596 IPR044746 GO:0140359
Amo01g0274 929 CDD ABCC_MRP_domain1 622 822 - -
Amo01g0274 929 ProSitePatterns ABC transporters family signature. 747 761 IPR017871 GO:0005524
Amo01g0274 929 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 308 588 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo01g0274 929 Pfam ABC transporter transmembrane region 308 573 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo01g0274 929 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 198 863 - -
Amo01g0274 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 844 IPR027417 -
Amo01g0274 929 SUPERFAMILY ABC transporter transmembrane region 301 600 IPR036640 GO:0005524|GO:0016021
Amo01g0274 929 Gene3D ABC transporter type 1, transmembrane domain 282 601 IPR036640 GO:0005524|GO:0016021
Amo01g0274 929 Pfam ABC transporter 640 774 IPR003439 GO:0005524
Amo01g0274 929 MobiDBLite consensus disorder prediction 903 920 - -
Amo01g0274 929 MobiDBLite consensus disorder prediction 875 902 - -
Amo01g0274 929 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 198 863 - -
Amo01g0274 929 SMART AAA_5 649 822 IPR003593 -
Amo01g0274 929 Gene3D - 602 871 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0274 Amo-Chr1 4610117 4613230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0274 622 883 Calmodulin-binding Proteins AT2G36910 29.371 4.78e-26 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0274 - K05666 gmx:106794105 1213.75