Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0273 ATGACAACAGCATATGGAGGTGTTCTTGTACCCTTCATATTACTTTCACAAATACTTACTGTAGCTTTGAATGTTGCGAGTAATTACTGGATGACTTTGGCAACTCCAGTTTCTGCAACTGCAGAAGCTGCTGTTGGAAGTGTTACGCTTATGGCTGTCTATGCTGCTTTAGCAATTGGAAGTTCCATTGGCAACCTTGTCAGATCAATGCTTACTGTGATATCTGGATATGTGACTGCAACCATACTCTTCAATAAATTGCATATGTGCCTTTTTCGAGCACCAATGTCATTTTTTGATGCCACCCCAAGTGGGCGAATCCTTAATAGAGCTTCAACAGACCAAAGTGCAATAGATATTAACATTCCAAATATATTATGGGCAGTTACCTTCAATCTGGCTTTTGTCTTGGGAAGTATTGCAGTGATGTCTCAAGCTGCATGGCAAGTGTTTATTGTATTTATTCCGGTGGTCGCAGCATGCATTTGGTACCAGCAATACTATTCAGCATCGGCACGGGAATTGGCACGGTTAGTTGGTATATGCCAAGCTCCAGTAATACAACATTTTTCTGAAACCATTTCTGGATCAACAACCATAAGAGCTTTTGAGCAAGAATCAAGATTCGGTGACATAAACATGAAATTGACGGATAGATATTCCCTACCAAAGATGTTTTCTGCTATAGCAATGGAATGGTTGTGTTTCAGATTGGATATTTTATCCTCCATCACATTTGCGTTCTGTTTGATTTTCTTGGTATCTTTTCCAAATGCAATTACTCCTGGCATTGCGGGGTTGGCTGTGACGTATGGGCTCAATTTAAATTCACAAGTGGTTAATATAGTTTGGTTTCTTTGCCAATTGGAGAACAAAATTATATCTGTAGAAAGAATTTTTCAATACACCTCCATCCCAAGTGAACCTCCTCTTGTCATAGAAGACAACCAACCTGATCCTTCATGGCCACCATTCGGGGAGGTTCATATCCAAGATCTACAGGTCAGGTATGCTCCTCACTTACCACTTGTATTACGTGGACTTACTTGCACTTTCGCTGCTGGAGCAAAAAATGGCATTGTGGGAAGAACTGGAAGCGGAAAAACAACTCTAGTGCAAACACTTTTCCGGCTTGTTGAGCCAGTTGCTGGAAAAATATTGATTGATAGCATCAATATATCTTCAATTGGAATTCATGATTTAAGATCCAAATTAAGCATTATTCCACAGGATCCAACAATGTTTGAAGGGACTATAAGGAACAACTTAGATCCACTGGAAGAATACACAGATGAACAAATTTGGGAGGCTTTAGATATGTGCCAACTTGGAGATGAAGTAAGGAAGAAAGAAGAGAAGCTGGACTCCATAGTTACCGAGAATGGCGAAAATTGGAGTATGGGTCAAAGACAGTTGGTCTGCCTTGGCCGCATCTTACTAAAGAAAAGCAAGATCCTAGTGCTTGACGAGGCTACGGCATCAGTTGATACAGCCACAGATAATATTATTCAGCAAACAGTTAAGCAGAATTTTTCAGGCTGCACAATAATTACAATTGCTCATAGAATAACTTCAATCCTTGACAGTGACATGGTTCTGTTTCTTAACCAAGGACTTATTGAGGAATATGATTCACCAAAAAAGTTGCTTAAGAACAAATCTTCAGCTCTTGCTCAACTAGTTGAAGAATACACTCGAAGGTCAAACTCTGGTTTTGAAAGTTGA 1725 0.3971 MTTAYGGVLVPFILLSQILTVALNVASNYWMTLATPVSATAEAAVGSVTLMAVYAALAIGSSIGNLVRSMLTVISGYVTATILFNKLHMCLFRAPMSFFDATPSGRILNRASTDQSAIDINIPNILWAVTFNLAFVLGSIAVMSQAAWQVFIVFIPVVAACIWYQQYYSASARELARLVGICQAPVIQHFSETISGSTTIRAFEQESRFGDINMKLTDRYSLPKMFSAIAMEWLCFRLDILSSITFAFCLIFLVSFPNAITPGIAGLAVTYGLNLNSQVVNIVWFLCQLENKIISVERIFQYTSIPSEPPLVIEDNQPDPSWPPFGEVHIQDLQVRYAPHLPLVLRGLTCTFAAGAKNGIVGRTGSGKTTLVQTLFRLVEPVAGKILIDSINISSIGIHDLRSKLSIIPQDPTMFEGTIRNNLDPLEEYTDEQIWEALDMCQLGDEVRKKEEKLDSIVTENGENWSMGQRQLVCLGRILLKKSKILVLDEATASVDTATDNIIQQTVKQNFSGCTIITIAHRITSILDSDMVLFLNQGLIEEYDSPKKLLKNKSSALAQLVEEYTRRSNSGFES* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0273 574 CDD ABC_6TM_ABCC_D2 10 303 IPR044726 GO:0140359
Amo01g0273 574 Gene3D - 311 564 IPR027417 -
Amo01g0273 574 Gene3D ABC transporter type 1, transmembrane domain 3 309 IPR036640 GO:0005524|GO:0016021
Amo01g0273 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 554 IPR027417 -
Amo01g0273 574 SUPERFAMILY ABC transporter transmembrane region 12 308 IPR036640 GO:0005524|GO:0016021
Amo01g0273 574 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 328 562 IPR003439 GO:0005524
Amo01g0273 574 SMART AAA_5 354 539 IPR003593 -
Amo01g0273 574 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 1 573 - -
Amo01g0273 574 CDD ABCC_MRP_domain2 326 546 - -
Amo01g0273 574 Pfam ABC transporter transmembrane region 12 264 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo01g0273 574 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 12 291 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo01g0273 574 Pfam ABC transporter 346 493 IPR003439 GO:0005524
Amo01g0273 574 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0273 Amo-Chr1 4606900 4610088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0273 326 562 Calmodulin-binding Proteins AT2G36910 29.461 3.50e-29 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0273 - K05666 gmx:106794105 938.332