Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0272 ATGTATGAAAGTGAAAGTGGTGACATTGATTGGGAAAATGAACTGAGAAAGTTTCAGAATGCAATAGCCACAGGGACCAAGTCCAAGAGAATCAAAGCCATGTCCATGCTTGCTCGTTACTCCAAACACGCCCCTGAACATGTATTGGCTCGCACCATACCCTTTCTTATGGAGATCCTTGGCCACAATAACCGTTCAATTGATTCTGCCAATTTCTCTCTTCAAATGGCTTCAGCTTATTGCTTGAAGTGCATAGCTTGCAGGAGTGACGAGTTGGTAACTCAAATGGGTGCAAACGATGCTGCGCAATTGCTTCTGAATTTGTTGCCTCATTCTGATGGGATGTTTCTGAAAGTTCTTGTGAAATGCTTGTTGGTTGTGGTTGGTTTTTGTAACACAAGTAGGGCTGTTGTTGCTACTGCTGGTGGGTTAGGTATCATTGTAGATAAGTTGAGTTCTTGCGAGGATCGGGGAATTCGAAGGTATTTGCTGGAGATTCTGAGTTTGTTGGCGCTGCGGCGCAATGTTAGGAGGGAAATAGTTAGGCTTGATGCTCTTCACTATGTTGTGGAGGCTGTTGGTGTTGGTAGTATGGTCTCCAGAGAGAGGGCATGTCAAGCAATTGGAATGTTTGGAGTTACAAGAGAAGGTAGGCGGGCTGTTGTTGAATTGGGTGCAATACTCCCAGTTGTGGAGCTATTTTGCAGCGGAGATCACACCACGAAGCTTGTGGCTGGGAATACTCTTGGTGTGATCTCTGCTCATGTTGATTGCATTAGGTCAATTGCTCAAGCTGGGGCTATCCCCCTTTATTCCGAGCTTCTTGAAGGGGGCGATCCTTCTGGTAAGGACATCGCGGAGGATGCATTTTGCGTGTTGGCTGTTGATGAGGCTAACGCCATCGAAATTGTTGGGCACTTAGTAAGGATTATGAGAGATGGTGATAATGAGGCGAAGGCTGCAGCTGCTAATGTGGTGTGGGATCTATCAACTTACAACCACTCAATACCAGTGGTGCGCGATTCAGGCGTGATTCCGGTACTTGTTGAGCTTTTGGGGAGTGGAAGCAATGACGTAAAGGAGAATGTTTCTGGTGCATTTTCTCAGATGAGCTATGATAGGGTGAATAGAATTGCACTTTCCGATGCTGGGGTGGTTCCAATCTTCATTGACTTGTTGCATGATGATTTTGAGGAACTAAGGGATAATGCAGCTGAGGCTCTTGTCAATTTTTATGAAGATCCATTGTACCATGATAGTGTATCTCATATAATTGATGTTCCTTCATTCAGAAGCATGCAGAATCGGCTGGCTCAACTTCGTGAAACGAATGAGCGTGCTCCTGTGGAAAGAATGAATATTGATCTTCCCGCTTGGAATTCAGATCAAATAACCTAA 1398 0.4499 MYESESGDIDWENELRKFQNAIATGTKSKRIKAMSMLARYSKHAPEHVLARTIPFLMEILGHNNRSIDSANFSLQMASAYCLKCIACRSDELVTQMGANDAAQLLLNLLPHSDGMFLKVLVKCLLVVVGFCNTSRAVVATAGGLGIIVDKLSSCEDRGIRRYLLEILSLLALRRNVRREIVRLDALHYVVEAVGVGSMVSRERACQAIGMFGVTREGRRAVVELGAILPVVELFCSGDHTTKLVAGNTLGVISAHVDCIRSIAQAGAIPLYSELLEGGDPSGKDIAEDAFCVLAVDEANAIEIVGHLVRIMRDGDNEAKAAAANVVWDLSTYNHSIPVVRDSGVIPVLVELLGSGSNDVKENVSGAFSQMSYDRVNRIALSDAGVVPIFIDLLHDDFEELRDNAAEALVNFYEDPLYHDSVSHIIDVPSFRSMQNRLAQLRETNERAPVERMNIDLPAWNSDQIT* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0272 465 PANTHER U BOX DOMAIN-CONTAINING 6 446 - -
Amo01g0272 465 Gene3D - 14 334 IPR011989 -
Amo01g0272 465 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 10-LIKE 6 446 - -
Amo01g0272 465 Pfam Armadillo/beta-catenin-like repeat 334 371 IPR000225 GO:0005515
Amo01g0272 465 Pfam Armadillo/beta-catenin-like repeat 375 410 IPR000225 GO:0005515
Amo01g0272 465 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 343 385 IPR000225 GO:0005515
Amo01g0272 465 SUPERFAMILY ARM repeat 52 414 IPR016024 -
Amo01g0272 465 Gene3D - 335 427 IPR011989 -
Amo01g0272 465 SMART arm_5 131 172 IPR000225 GO:0005515
Amo01g0272 465 SMART arm_5 373 413 IPR000225 GO:0005515
Amo01g0272 465 SMART arm_5 255 295 IPR000225 GO:0005515
Amo01g0272 465 SMART arm_5 214 254 IPR000225 GO:0005515
Amo01g0272 465 SMART arm_5 296 331 IPR000225 GO:0005515
Amo01g0272 465 SMART arm_5 332 372 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0272 Amo-Chr1 4603794 4606099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0272 214 428 U-box Gene Family AT2G23140 26.577 4.58e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0272 - - gmx:100819735 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0389 11 6264725 6266713 Amo01g0272 01 4603794 4606099 hybridization