Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0265 ATGCGGATGGAGTCTCCAGATTTCGACGAAGAAGAGGAGATTCCGTTGAAGGAGGAAACTTCCTTTACCTCCTCTTCGTCTTCGCCGACGAAAGGAGGACTAACTCATCACGGTCACAGTCACAGTCACAGTCATGGTAATCATCACAATCACAGTAATCGCAACAGTCATGCTTTCAGTTTCGAGACCACCACGGCGGCCGTGCTCTCTCCAGATTTACCCAAATCTTCTGTATTCAGGCTTTTGCGGATCACACGAATCAGGAGTCTTTATGTAGTCTTAATCAAAGCCAAGATCAACCTACTCCTCCCCTTTGGTCCACTCGCCATTGCCCTCCATTACCTCACCGGAAAACATGGATGGGTGTTCTTCTTCAGCTTGTTGGGTATTGCTCCTTTGGCAGAACGTTTGGGTTATGTTACTGAGCAACTTGCATTCTACACGGGACCAACAGTTGGGGGTCTGCTCAATGCCACATTTGGCAATGCAACCGAAATGATTATATCAATCTTTGCATTGAAAAACGACATGATTAGGGTTGTTCAACAATCGTTACTCGGCTCAATCTTGTCGAATATGCTCCTAGTTCTTGGATGTGCATTCTTTACCGGTGGGATTGTCCACTACAAAAAGGTGCAGGTTTTCAATAAGGCCGCTGCTGTTGTCAATTCCGGGTTGCTGTTGATGGCTGTGATGGGCATACTTTTCCCGGCGGTGCTTCACTTTACTCATTCAGAGGTTCACCTTGGGAAGTCGGTGTTATCTCTATCAAGATTTAGCAGCTGTGTAATGCTAGTCGCGTATGCGAGCTACCTTTTTTTTCAACTTAAGAGCCAGCCCAATCTTTATAGTCCTGTGGATGAGGAAGGAGTTAGTGGTGAAAATTCAGATGAGGAGGAAGAACTTGAATTAACTCAAGCGGAAGCAATAGTCTGGCTTGCTATCTTGACGGCATGGGTATCTTTATTGTCCGGGTACCTTGTAGACGCCATAGAGGGAGCATCTGAGTCATTAAATATGTCGATGGCATTTATCAGTGTCATCTTGCTCCCAATTGTTGGCAATGCTGCAGAACATGCAAGTGCTATCATGTTTGCCATGAAGGACAAACTTGATATCACCATTGGAGTTGCTGTTGGATCATCTACACAGATATCTATGTTTGTGATCCCATTCTGTGTGGTTGTTGGATGGTGTATGGGAAAAGAAATGGACTTGAATTTTCAACTCTTCGAGACTGCCACTCTTTTTATCACGGTGCTGGTAGTTGCATTTATGATGCAGGAAGGAACCTCAAACTATTTTAAAGGCTTGATGCTTATATTATGCTATCTTATTGTCGCTGCCAGTTTCTTCGTACATGTAGACCCTAAAACTGGTGATGACTAG 1389 0.4449 MRMESPDFDEEEEIPLKEETSFTSSSSSPTKGGLTHHGHSHSHSHGNHHNHSNRNSHAFSFETTTAAVLSPDLPKSSVFRLLRITRIRSLYVVLIKAKINLLLPFGPLAIALHYLTGKHGWVFFFSLLGIAPLAERLGYVTEQLAFYTGPTVGGLLNATFGNATEMIISIFALKNDMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHYKKVQVFNKAAAVVNSGLLLMAVMGILFPAVLHFTHSEVHLGKSVLSLSRFSSCVMLVAYASYLFFQLKSQPNLYSPVDEEGVSGENSDEEEELELTQAEAIVWLAILTAWVSLLSGYLVDAIEGASESLNMSMAFISVILLPIVGNAAEHASAIMFAMKDKLDITIGVAVGSSTQISMFVIPFCVVVGWCMGKEMDLNFQLFETATLFITVLVVAFMMQEGTSNYFKGLMLILCYLIVAASFFVHVDPKTGDD* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0265 462 MobiDBLite consensus disorder prediction 36 52 - -
Amo01g0265 462 Pfam Sodium/calcium exchanger protein 310 449 IPR004837 GO:0016021|GO:0055085
Amo01g0265 462 Pfam Sodium/calcium exchanger protein 121 276 IPR004837 GO:0016021|GO:0055085
Amo01g0265 462 Gene3D - 150 453 IPR044880 -
Amo01g0265 462 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 78 459 IPR004713 GO:0006812|GO:0008324|GO:0016021
Amo01g0265 462 MobiDBLite consensus disorder prediction 19 35 - -
Amo01g0265 462 MobiDBLite consensus disorder prediction 1 55 - -
Amo01g0265 462 TIGRFAM cax: calcium/proton exchanger 102 452 IPR004798 GO:0006816|GO:0015369
Amo01g0265 462 PANTHER VACUOLAR CATION/PROTON EXCHANGER 78 459 - -
Amo01g0265 462 TIGRFAM caca2: calcium/proton exchanger 92 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0265 Amo-Chr1 4489544 4497321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0265 70 457 Antiporters AT3G13320 74.036 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0265 K07300 - gmx:100806000 671.003