Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0261 ATGGAGTCAGTAGGCAAAAGTAATAGGGAAATAGTTGTGGTGGTGACGATGTTTCTTTCAGTTTGTTTAGTGTGTTATTGCGATGGCAGTGTAATCGTATCGAAAGATGGGAACGGAGATTACAAAAGTGTGAGTGAAGCAATTAAGAATGCTCCAAAGTTGAGTGAAAGTGTTTACACCATTCATGTTCGAGCTGGTACTTATGAAGAGTATGTTGTTATTCATCATGACAAGACCAATATTAAGCTTGTTGGAGATGGTCCTCGCCACACTAAATTAGTTGCTTACCAAGGTTCCACCATAGATATTCATGGAGAAGGGTTCATGGCGGAAAGCATAGCATTTGTGAACTCAGCGGGTCTAAAAGCAAGCGGAGCAGTAGCCGTACGCAACGAAGCAAACAACACCGTCTTCTACCGATGTTCCATCGACGGTTACCAGGACACTCTATGGGCAGTTTCCGGCCGGCAGTTCTACAAGAACTGCGACATCTACGGCACCGTCGACTTCATCTACGGCGCCGCCGCCGCCGTCTTCCAGGACTGCATGCTCTACGCCAGATACCGTGATCACGTGACATTCACCGCTCAGTCACGTGACGATCCAAATGACAATAACTCCGCCTTCACTTTCCAGAGATGCAACTTCACGATGTCTCCAGAAGATTCCATTTCGCATGCTAAGTCGGAGGTGCATGCGACTTTGGGCCGGCCATGGAGGCCGTACTCGACGGTGGCTATACTGCAGTGCTTTATTGACTCTATTGTTGGGCCCGCGGGCTGGGAAGAGATGCCAGGGCAGCCCACTGATAGGGTTACGTATGTGGAGTATGGGAATGTTGGGCCTGGAGCTGGTACGGACGGGAGAGTGAAGTGGCCTGGTGTTAGAGTGCTTCATCGACCAGCTGAAGCACAACGTTTCACTGCTTCCCATCTCTTGGATGCTGACTCCTGGATTCCATCCACTGGTGTTCCTTATGACAATGGATTCTAG 993 0.4924 MESVGKSNREIVVVVTMFLSVCLVCYCDGSVIVSKDGNGDYKSVSEAIKNAPKLSESVYTIHVRAGTYEEYVVIHHDKTNIKLVGDGPRHTKLVAYQGSTIDIHGEGFMAESIAFVNSAGLKASGAVAVRNEANNTVFYRCSIDGYQDTLWAVSGRQFYKNCDIYGTVDFIYGAAAAVFQDCMLYARYRDHVTFTAQSRDDPNDNNSAFTFQRCNFTMSPEDSISHAKSEVHATLGRPWRPYSTVAILQCFIDSIVGPAGWEEMPGQPTDRVTYVEYGNVGPGAGTDGRVKWPGVRVLHRPAEAQRFTASHLLDADSWIPSTGVPYDNGF* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0261 330 PANTHER PECTINESTERASE 12 329 - -
Amo01g0261 330 Pfam Pectinesterase 31 315 IPR000070 GO:0030599|GO:0042545
Amo01g0261 330 Gene3D - 29 330 IPR012334 -
Amo01g0261 330 PANTHER PECTINESTERASE 12 329 - -
Amo01g0261 330 SUPERFAMILY Pectin lyase-like 30 328 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0261 Amo-Chr1 4468649 4472738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0261 33 330 Carbohydrate Esterase AT4G02300 40.385 5.18e-78 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0261 K01051 - gmx:102665195 428.713