Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0252 ATGGAATCGGATCTTGGCAAACTCTTCATTGGAGGGATATCTTGGGACACCGATGAGGAACGTCTCAAGGAATATTTTGGAAAATATGGGGAGGTTATAGAGGCTGTGATCATGAGAGATCGCACCACCGGTCGTGCTCGTGGTTTCGGCTTTGTTGTCTTTGCTGATCCTGCTGTTGCTGAGAGAGTCATTGTGGATAAGCACATAATCGATGGCCGCACGGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGCAGTCCATAAATAGACAGTCCGGTAGTGCGAATGCCTCTCCTGGTCCTGGGCGCACGAAAAAGATCTTTGTTGGAGGTTTGCCATCAACTATCACAGAAAGCGATTTCAAGAAGTATTTTGATCAGTTCGGTACAATTACTGATGTTGTAGTAATGTATGATCACAATACTCAAAGGCCAAGAGGTTTTGGCTTCATCACATTTGATTCGGAAGAAGCTGTGGATCGAGTTCTTTATAAAACTTTTCATGAACTGAATGGAAAGTTGGTCGAAGTCAAGAGAGCAGTTCCGAAAGAGCTATCCCCTGGCCCCAGCCGAAGTCCATTGATAGGATATAACTATGGTATAAATAGGGCCAGTAGCTATCTAAACAACTACGCTCAGGGTTATAGTATGAGTCCAATAGGAGGATATGGCGTCAGGATGGATGGTAGGTTTAGTCCTCTTACTAGTGGTAGAAGCGGGTTTACTCCATTCGGCAACACTGCTTATGGAATGGGAGTGAATCTTGAGTCAGGATTGAGCCCAAGCTATGGAGGAACTTCTAGTTACGGGAGCAATATAGGATACGGTCGAGTATTTAGTCCTTTCTACAGTGGAAACTCGAGCAGATACACCACTCCTATAGGCTATAGTGGGGGAAATAGCAGAAGCGACTCTATTATGAACTCACCTTCTCGAAATGTCTGGGGAAATGGAGTCCTGAATAACGCTAATAACGCAGTCAGTCCTGGTTCTTTCTTGGGATCTGGAAGTGGGAGCTTTGGTGTTTCAATTGGAAATAGTGGTGCTAATTGGGGTCCATCTATTCCATCCCAAGCCGGAGGAGCTGCTTCGGGCTATGCTACGGGGAATAATGTTTATGAAGGTGGAGAATCCGGCTTTGGGTTAGGCGGGGGAGGGTATGGAAGAAACAGTGGTACGGGTATGACTCCATCCTCTACGTTCGCTGCATCAACTGGTAGTTTTGAAGGATCCTATGGGGATTTATACCGAACTGGCAGTGGTTCAGTTTACAATGACTCTGCTTGGCGAACCGCTTCTTCTGAGATGGATGGTTCTGGCTCTTTTGGTTATGGTCTTGGTGGTATTGCTTCAGACGACCCTGTAAAGACTTCTGAGGGTTATATTGGAAGCTACAATGTTACAAGTAGACAATCTAATAGAGGAATTGCTGCTTAG 1440 0.4549 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQQSINRQSGSANASPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLYKTFHELNGKLVEVKRAVPKELSPGPSRSPLIGYNYGINRASSYLNNYAQGYSMSPIGGYGVRMDGRFSPLTSGRSGFTPFGNTAYGMGVNLESGLSPSYGGTSSYGSNIGYGRVFSPFYSGNSSRYTTPIGYSGGNSRSDSIMNSPSRNVWGNGVLNNANNAVSPGSFLGSGSGSFGVSIGNSGANWGPSIPSQAGGAASGYATGNNVYEGGESGFGLGGGGYGRNSGTGMTPSSTFAASTGSFEGSYGDLYRTGSGSVYNDSAWRTASSEMDGSGSFGYGLGGIASDDPVKTSEGYIGSYNVTSRQSNRGIAA* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0252 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Amo01g0252 479 MobiDBLite consensus disorder prediction 78 105 - -
Amo01g0252 479 Gene3D - 6 85 IPR012677 -
Amo01g0252 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 167 IPR000504 GO:0003723
Amo01g0252 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Amo01g0252 479 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 479 - -
Amo01g0252 479 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Amo01g0252 479 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Amo01g0252 479 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Amo01g0252 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Amo01g0252 479 Gene3D - 86 194 IPR012677 -
Amo01g0252 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Amo01g0252 479 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 479 - -
Amo01g0252 479 SMART rrm1_1 107 179 IPR000504 GO:0003723
Amo01g0252 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
Amo01g0252 479 MobiDBLite consensus disorder prediction 86 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0252 Amo-Chr1 4388972 4393479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0252 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 25.281 5.00e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0252 K14411 - gmx:100805131 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0415 11 6685582 6689886 Amo01g0252 01 4388972 4393479 hybridization