Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0246 ATGGGTATCTCTCGTGATTCTATGCACAAGAGGCGCGCCACTGGTGGCAAGAAGAAGGTTTGGAGGAAGAAGAGAAAGTATGAGCTTGGAAGGCAACCAGCAAACACAAAGCTCTCCAGCAACAAAACTGTTAGGAGGATCAGGGTTCGAGGTGGGAATGTAAAATGGCGTGCTTTGAGGCTTGACACTGGGAACTACTCTTGGGGTAGTGAAGCTGTGACTCGCAAAACGAGGATTCTCGATGTGGTGTATAATGCCTCCAACAATGAACTTGTTCGAACTCAGACTTTGGTCAAGAGTGCCATCGTTCAGGTTGATGCTGCACCTTTCAAACAGTGGTATCTCCAGCATTATGGTGTCGACATTGGTCGCAAGAAGAAGGGTGCAACTTCTGGCAAGAAAGAAGGGGAGGATGCTGAAACTGCAACCGAAGAAGTGAAGAAGAGTAACCATGTCTTGAGAAAGTTGGAGAAGCGTAAACAAACCCGGGTGCTTGATYCYCACATTGAAGAACAATTTGGAAGTGGTCGCCTCTTGGCTAGTATCTCATCCCGCCCCGGTCAATGTGGTCGTGCTGATGGATATATATTGGAGGGCAAAGAGCTTGAGTTCTACATGAAGAAGCTTCAGAAAAAGAAGGGCAAGGGTGCTGCTTAA 657 0.4734 MGISRDSMHKRRATGGKKKVWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKGATSGKKEGEDAETATEEVKKSNHVLRKLEKRKQTRVLDXHIEEQFGSGRLLASISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0246 218 MobiDBLite consensus disorder prediction 125 144 - -
Amo01g0246 218 MobiDBLite consensus disorder prediction 1 20 - -
Amo01g0246 218 TIGRFAM eS8: ribosomal protein eS8 1 199 IPR001047 GO:0003735|GO:0005840|GO:0006412
Amo01g0246 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 218 - -
Amo01g0246 218 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Amo01g0246 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 218 IPR001047 GO:0003735|GO:0005840|GO:0006412
Amo01g0246 218 Gene3D - 162 215 - -
Amo01g0246 218 Gene3D - 32 161 - -
Amo01g0246 218 CDD Ribosomal_S8e_like 5 197 - -
Amo01g0246 218 Coils Coil 139 159 - -
Amo01g0246 218 Pfam Ribosomal protein S8e 5 197 IPR022309 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0246 Amo-Chr1 4316351 4318737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0246 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 84.951 4.42e-127 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0246 K02995 - gmx:100527325 376.326