Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0236 ATGATAAATAATTTGTTAATTAATTTTGCTCATGAACACAAGAAAGTGGTCCCAATATCACTGTTTGTTGCTGTTCTGTGCCTTTGCTTGGTCATTGGTCACTTGCTTGAAGAAAATCGATGGGTTAATGAGTCCATTGTAGCCATTTTAGTTGGATGCATAGCTGGAAGCATACTCTTGTTAGTCACCAAAGGAAAAAGTTCCCACATTCTTACCTTTGATGAAGAACTCTTCTTTATATATCTCCTTCCTCCCATAATCTTCAATGCTGGATTCCAGGTGAAAAAGAAACAATTCTTCCATAACTTCTTAACCATCATGATGTTTGGAGTGATTGGTGTTTTTATTTCGACTTCTATTATTACGGGCGGCAGTTGGTGGCTGTTTCCTAAGTTGAACTTCCTCGGCTTGAGTGCGCGGGATTACCTCGGTGAGATTGCTATAGGAACAATTTTCTCATCAACAGACACAGTTTGTACACTGCAGGTGCTGCATCAAGATGAAACTCCTTTACTATACAGCATAGTGTTTGGGGAAGGAGTGGTGAATGATGCAACATCAGTTGTTCTCTTCAATGCTGTTCAAAAGCTTGATGTTTCCAGACTCAGTGGCAGGGCATTCCGCGTTCTCGGAGATTTCTTGTATCTCTTCTCATCAAGCACTGCTCTTGGAGTATTAACCGGACTTCTCACAGCATATATCTTGAAAGCCTTAAGTTTTGGAAGACATTCAAGTGTTCGCGAAATTTCATTGATGATGTTAATGGCATACCTATCTTACATGTTGGCCGAGCTACTTGAATTAAGTGGAATCCTCACTGTTTTCTTTTGTGGGATACTAATGTCACATTATGCATGGCATAACGTAACTGAAATTTCAAGAATCACAACCAGGCATGTGTTTGCGACAATATCGTTTATTGCAGAAACTTTCATATTTCTTTACGTGGGAATGGATGCACTTGACATTGAAAAGTGGAGGATGACCAAATTAAGTTCCGGAAGTTTGATGGGAATTTACGGTTGCTTAATCTTACTGATATTAGTTGGGCGTGCTGCATTCGTCTTCCCGCTCTCGGCTTTTGCCAATTCCATGATGAGTAGGCGCGCCGGGAGCGGGTCAAGTATCACATTCAAACATCAGATAATTATTTGGTGGGCTGGTCTAATGAGGGGAGCAGTCTCAATTGCTCTTGCTTTCAAACAGTTCACATTCTCTGGTGTTACCTCTGATCCCGTGAATGCAACTATGATTACCAACACCATTATTGTTGTTCTTTTCACCACATTAGTGTTTGGTTTTCTAACAAAACCACTGATTAGATACATGCTTCCCCACAACAATGGAACAAGAAGAAACACAAACCATGAAGCAGCAGGGACACCTGGTGAGGACTTGAACTTACCTTTGTTGTCTTTTGAAGAGTCAGCAGCAACAAACATAAGCCGTGCAAAGGAAAGTCTTTCCATGTTCATAGGGTCTCCAGTATACACCATACATCACTATTGGAGAAAGTTTGATGATGCATACATGAGGCCTCTGTTTGGTGGACCCCACCATAACAGGTCGCGGTGCTAA 1578 0.4119 MINNLLINFAHEHKKVVPISLFVAVLCLCLVIGHLLEENRWVNESIVAILVGCIAGSILLLVTKGKSSHILTFDEELFFIYLLPPIIFNAGFQVKKKQFFHNFLTIMMFGVIGVFISTSIITGGSWWLFPKLNFLGLSARDYLGEIAIGTIFSSTDTVCTLQVLHQDETPLLYSIVFGEGVVNDATSVVLFNAVQKLDVSRLSGRAFRVLGDFLYLFSSSTALGVLTGLLTAYILKALSFGRHSSVREISLMMLMAYLSYMLAELLELSGILTVFFCGILMSHYAWHNVTEISRITTRHVFATISFIAETFIFLYVGMDALDIEKWRMTKLSSGSLMGIYGCLILLILVGRAAFVFPLSAFANSMMSRRAGSGSSITFKHQIIIWWAGLMRGAVSIALAFKQFTFSGVTSDPVNATMITNTIIVVLFTTLVFGFLTKPLIRYMLPHNNGTRRNTNHEAAGTPGEDLNLPLLSFEESAATNISRAKESLSMFIGSPVYTIHHYWRKFDDAYMRPLFGGPHHNRSRC* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0236 525 Pfam Sodium/hydrogen exchanger family 23 440 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Amo01g0236 525 Gene3D - 145 193 - -
Amo01g0236 525 PRINTS Na+/H+ exchanger signature 77 88 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Amo01g0236 525 PRINTS Na+/H+ exchanger signature 149 159 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Amo01g0236 525 PRINTS Na+/H+ exchanger signature 106 114 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Amo01g0236 525 PRINTS Na+/H+ exchanger signature 91 105 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Amo01g0236 525 PANTHER SODIUM/HYDROGEN EXCHANGER 7 521 - -
Amo01g0236 525 PANTHER SODIUM/HYDROGEN EXCHANGER 7 521 IPR018422 GO:0006812|GO:0015299|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0236 Amo-Chr1 4226914 4233681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0236 10 525 Antiporters AT5G55470 72.031 0.0 767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0236 - - gmx:100813332 847.425