Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0231 ATGGCGCCTTCGCGAGTCCCAGCTACAACTCTCTTCTCCTCCTCCTCGATCCTTCTCACGCAGGAGCAGTTTGCGAACCTTCTAATAAAGCTACTAATGCCAACGAGCTTCACCAACATCCAAGGAATCACACTCAAGACAATTCCATCCGCCACCAAGATCAAGATAAAGCACGTCCTTGAGTCCCTCTATGGCTTCGTAGTCGAGAGGGTTCAAACCCTAAACATGGAAGGGAAGAAGAAGAAGCGTGGTGGCATCCTCTTTGCAAAACCCGATTACAAGAAGGCTTACGTCACTCTCAAGACCCCTCTTTCAATCGACATGAATCTTTTCCCGCTCAAAATGGTTGAAGATGCCAGGAAGCAGATAAACAAGAAGAACGTGTCAAGCGTCATTGAGGACGAAGAAGAGGAAGAGCTGCTGAGGGAGAAAACTCGCGAGAATGTTGTGAAGCTTTTAAAAGTACACATCAATCACACGAACATGTCTCTGTATCTTGCTTTTGATTACGCCGGGCACGACCTTTATTTTATATTCATGCTCGATGAATAA 552 0.4601 MAPSRVPATTLFSSSSILLTQEQFANLLIKLLMPTSFTNIQGITLKTIPSATKIKIKHVLESLYGFVVERVQTLNMEGKKKKRGGILFAKPDYKKAYVTLKTPLSIDMNLFPLKMVEDARKQINKKNVSSVIEDEEEEELLREKTRENVVKLLKVHINHTNMSLYLAFDYAGHDLYFIFMLDE* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0231 183 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 40 105 IPR012678 GO:0003735|GO:0005840|GO:0006412
Amo01g0231 183 Gene3D Phosphorylase Kinase; domain 1 110 182 - -
Amo01g0231 183 Pfam Ribosomal protein L23 42 106 IPR013025 GO:0003735|GO:0005840|GO:0006412
Amo01g0231 183 PANTHER RIBOSOMAL PROTEIN L23-RELATED 24 138 IPR013025 GO:0003735|GO:0005840|GO:0006412
Amo01g0231 183 PANTHER BNAC07G51330D PROTEIN 24 138 - -
Amo01g0231 183 Gene3D - 19 109 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0231 Amo-Chr1 4175284 4176564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0231 140 178 Core Cell Cycle Gene Families AT5G63610 71.795 6.86e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0231 K02892 - nnu:104604135 160.999