LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo01g0222	ATGAGTAAGCTTCAGAGTGATGCACTGAGAGAAGCAATCACTGGGATAGTGGCTGATTCCAAAGAGAAGAATAGGAAGTTTGTGGAGACCATTGAGCTCCAAATTGGACTCAAAAACTATGACCCACAAAAGGATAAGCGCTTCAGCGGTTCTGTAAAGTTGCCACACATCCCAAGGCCCAAGATGAAAATCTGCATGCTTAAAATGGGATTGGATTGGATGGACGTTGAAGCATTGAAGAAGCTTAACAAAAATAAGAAATTGGTGAAGAAACTTGCCAAGAAATATCATGCATTCTTGGCTTCTGAAGCAGTCATTAAGCAGATTCCTCGTCTCTTGGGTCCTGGTCTCAACAAGGCAGGCATTTTTATAGTCTGTTTTAAGGAATTGCTATGTTGTGTGCCCTTTGAATCTCAGTCATTACCTTCACTAATTCTTGTTAATTCCCATAACTTTGCAGGAAAGTTTCCCACACTTGTTACCCACCAAGAATCCCTCGAGTCTAAAGTCAATGAGACCAAGGCTATGTTGAAATTTCAGCTTAAGAAGGTGCTCTGCATGGGAGTAGCTGTAGGCAATGTAAGCATGGAGGAAAAGCAAATCTTCCAAAACGTAGAACTGAGCGTTAACTTCCTTGTGTCCTTGTTGAAAAAGAACTGGCAGAATGTGAGTATCATGCTCAACAGAGTTAGGTGCTTGTATCTGAAGAGTACCATGGGAAAATCCTACCGTTGTGTATTTTATATTTTAACTAATAGTTGA	762	0.4068	MSKLQSDALREAITGIVADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLKMGLDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGIFIVCFKELLCCVPFESQSLPSLILVNSHNFAGKFPTLVTHQESLESKVNETKAMLKFQLKKVLCMGVAVGNVSMEEKQIFQNVELSVNFLVSLLKKNWQNVSIMLNRVRCLYLKSTMGKSYRCVFYILTNS*	254

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo01g0222	253	Gene3D	-	1	109	-	-
	Amo01g0222	253	Gene3D	-	159	244	-	-
	Amo01g0222	253	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	2	127	-	-
	Amo01g0222	253	PANTHER	60S RIBOSOMAL PROTEIN L10A-3	2	127	-	-
	Amo01g0222	253	SUPERFAMILY	Ribosomal protein L1	15	123	IPR023674	-
	Amo01g0222	253	PIRSF	RPL1p_RPL1a_RPL10e_RPL1o	1	123	IPR002143	GO:0003723\|GO:0003735\|GO:0006412\|GO:0015934
	Amo01g0222	253	PIRSF	RPL1p_RPL1a_RPL10e_RPL1o	151	247	IPR002143	GO:0003723\|GO:0003735\|GO:0006412\|GO:0015934
	Amo01g0222	253	CDD	Ribosomal_L1	9	244	IPR028364	-
	Amo01g0222	253	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	146	245	-	-
	Amo01g0222	253	PANTHER	60S RIBOSOMAL PROTEIN L10A-3	146	245	-	-
	Amo01g0222	253	SUPERFAMILY	Ribosomal protein L1	153	244	IPR023674	-
	Amo01g0222	253	Pfam	Ribosomal protein L1p/L10e family	22	122	IPR028364	-
	Amo01g0222	253	Pfam	Ribosomal protein L1p/L10e family	153	240	IPR028364	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo01g0222	Amo-Chr1	4075511	4078259	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo01g0222	1	244	Cytoplasmic Ribosomal Protein Gene Family	AT1G08360	71.260	3.25e-105	302

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo01g0222	K02865		-	mus:103980194	335.88