Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0218 ATGGAGGTTCCTTCTGCAAAATGGGTTCTCAATGCTTGCTTGTTGCTGCTCTTTCTGCTCCTCATTGGAGAAGCCATGGCCACATCACAGATCTCTGACCTCAAGGTGAAAGAGGCGGAGGAATTAAATGAACGTGCTGCTGTAACTGACCCGGAAGAGGTGGTTTCCATGGTTCAGATGGCAATGAAGAATAGCACTGAGAGAAGGAAGCTAGGTTTCTTCTCCTGTGGAACTGGTAATCCAATCGATGATTGCTGGCGCTGCGACCAGAATTGGCAGAAAAACAGGAAGAGACTAGCAGATTGTGGCATTGGATTCGGGCGGAATGCGATCGGTGGCCGCGACGGAAAGTTCTATGTTGTAACTGACCCTAGAGATGATGACCCTGTTAACCCAAAGCCAGGGACATTGCGGCACGCGGTGATCCAGGACAGGCCACTATGGATTGTGTTCAAAAGGGACATGGTGATCCAGCTGAAACAGGAGCTGATTATGAACAGCTTCAAGACCATTGATGGAAGAGGAGCCAATGTGCACATTGCCAATGGAGGTTGCATAACAATTCAGTATGTTACCAATGTSATCATCCATGGTCTCCATATCCATGACTGCAGGCCTACTGGGAATGCCATGGTGAGAAGCTCCCCCACCCATTTCGGGTGGAGGACYATGGCTGATGGGGATGCCATCTCCATTTTTGGATCAAGCCATATTTGGGTTGATCATAATTCATTGTCACATTGTGCTGATGGCCTTGTTGATGCTGTCATGGGCTCAACTGCTATAACTATTTCTAACAACCATCTCACCCACCACAATGAGGTGATTCTGTTAGGGCACAGTGACTCATACACAAGAGACAAGCAAATGCAGGTGACCATTGCCTATAACCATTTTGGAGAAGGACTCATCCAGAGAATGCCAAGATGTAGACATGGGTATTTCCATGTGGTGAACAATGACTATACTCATTGGGAGATGTATGCAATTGGTGGAAGTGCTAACCCCACCATCAACAGCCAGGGCAATAGATACAATGCTCCAGCTAACCCATTTGCTAAAGAGGTGACAAAGAGAGTGGAAACAGCTGAAACGCAATGGAAGGGTTGGAATTGGAGATCAGAGGGAGATTTATTGCTGAATGGTGCATACTTCACTCCATCAGGTGCTGGAGCTTCAGCAAGCTATGCAAGAGCCTCAAGCTTAGGTGCCAAATCATCTTCCATGGTTGGTTCCATGACTTCTAATGCTGGTGCACTTGGCTGCAAAAGAGGCCGTCGGTGCTAG 1287 0.4755 MEVPSAKWVLNACLLLLFLLLIGEAMATSQISDLKVKEAEELNERAAVTDPEEVVSMVQMAMKNSTERRKLGFFSCGTGNPIDDCWRCDQNWQKNRKRLADCGIGFGRNAIGGRDGKFYVVTDPRDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIMNSFKTIDGRGANVHIANGGCITIQYVTNVIIHGLHIHDCRPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHLTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPANPFAKEVTKRVETAETQWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSMTSNAGALGCKRGRRC* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0218 428 PRINTS Pollen allergen Amb family signature 226 247 IPR018082 -
Amo01g0218 428 PRINTS Pollen allergen Amb family signature 162 178 IPR018082 -
Amo01g0218 428 PRINTS Pollen allergen Amb family signature 102 119 IPR018082 -
Amo01g0218 428 PRINTS Pollen allergen Amb family signature 370 394 IPR018082 -
Amo01g0218 428 PRINTS Pollen allergen Amb family signature 399 422 IPR018082 -
Amo01g0218 428 PRINTS Pollen allergen Amb family signature 126 151 IPR018082 -
Amo01g0218 428 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Amo01g0218 428 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Amo01g0218 428 Pfam Pectate lyase 161 343 IPR002022 -
Amo01g0218 428 SMART amb_all 154 351 IPR002022 -
Amo01g0218 428 PANTHER PECTATE LYASE 35 425 - -
Amo01g0218 428 PANTHER PECTATE LYASE 18-RELATED 35 425 IPR045032 GO:0030570
Amo01g0218 428 Gene3D - 79 421 IPR012334 -
Amo01g0218 428 SUPERFAMILY Pectin lyase-like 56 422 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0218 Amo-Chr1 4036360 4040709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0218 8 428 Polysaccharide Lyase AT1G04680 81.412 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0218 K01728 - gmx:100808253 786.563