Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0214 ATGGGTAGCGAAGAAGAGAAGGTTCTAGAGAAACAACTTGAGCATCAATTGCAAGAGCAAAGGGATTCTCTCTCTGCTATCGACGACGCTCTTCTCGCTGATCCATCCAACACCGAGCTTCTCGCGGTTCATGGGGAGCTTGTTCAGGCAATTAAGGATGCAGAGGAAGGACTTCTTCACCTAAAACGGGCAAGATTATTACAGGAAGCAGATTTGGTGTTGCACAGCACTAATCTTTTTGCTGAAGAAGAGAAAGTAGAGGCTCTTGACCCCACAGATGAACCAGAGCCACTGGAGGAAAGTTGTTATTCTGTTGGATCTAAATGCAGATTCCGTCACAAAGATGGGAGATGGTACAATGGTCAAGTGGTACAGTTGGATAAGTCAGCAGCGAAGCTTTCATTCCTTACTCCTACATCTGAGAACATGCTGATCTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTACTAACTGTCGCCTGTCACATGGAGTTGATGTTCAATTGTCCTCACTGAAGAAATATGTCCCAACAATATGGAAGCCATCCTTGGCGGGGTCGAGTATATGGGCAGTCTCAAATGCTCATGGGGGCATTTGGAAGCGAGCTGAGCTTGAGTCTTGGGACGAGGATGTCGGAGCTGGACAAGTTGTTTTCCGAGATGATGGAAGTTCAGCAAAGCTTGGGGCTGAAGAAATGGTATTGTCTGAGTATGCGGAAGTGAGTGACACAGAGAGTGATTCCAGCTTAGAAAACTCCGACTCTAGTGACTATGAGGAAGAGGAATTGCAAGGTTTAGGATTTCTTGAGAGCACCAACCTACAAAGGGGTGTTCAGACTGAAACTGCTATATTTGCCAAGTGGGAGAACCACACTAGAGGCGTAGCATCGAAAATGATGGCTAATATGGGTTACCGAGAAGGAATGGGTTTAGGCATAACTGGTCAGGGGATGCTAGATCCCATAACAGTGAAAGTCCTACCGGCAAAGCAATCCTTAGATCATGCACTTGAGTCTCAAAAAGGAGAAGAGGACACAGAGAAACAAAGCAAGAAACGGAGCCGAGGTGGTAAAAGAAAGCGCGATAAGAAATTAATGGAAGCAATTCGAGCAGCAAAAGAAGAAGAATCGAACGTAGACGTCTTTACACTAATAAATAATCAACTTGCAGTGCACGGCCAAGCTTTAAATGGTGGATCAGGGAAAAAGCAGAGCAAAGATTCCGCAGAAGGTAAAAAGGTGGATAGGCGAACATTGATTGCGTATGAGGATGAGGTGAAGGATTTGAAGTTGAGGGTTGAGAAGCTGGAAGCAATAGTGAATATCAACAGAAAAGAGAAGGCTGTTTATGAGGCTGCTATGAGAAAATTAGCAGAGACACGTAAGGCATTAGCCGAAGCTGAAGCCACGCATGCCTCTGCATCGAATGCAGTTGTTAGCAAAGAAAAAGAGAAGAGATGGCTTAAGTTTTAG 1476 0.4485 MGSEEEKVLEKQLEHQLQEQRDSLSAIDDALLADPSNTELLAVHGELVQAIKDAEEGLLHLKRARLLQEADLVLHSTNLFAEEEKVEALDPTDEPEPLEESCYSVGSKCRFRHKDGRWYNGQVVQLDKSAAKLSFLTPTSENMLICKFFLQQRCRFGTNCRLSHGVDVQLSSLKKYVPTIWKPSLAGSSIWAVSNAHGGIWKRAELESWDEDVGAGQVVFRDDGSSAKLGAEEMVLSEYAEVSDTESDSSLENSDSSDYEEEELQGLGFLESTNLQRGVQTETAIFAKWENHTRGVASKMMANMGYREGMGLGITGQGMLDPITVKVLPAKQSLDHALESQKGEEDTEKQSKKRSRGGKRKRDKKLMEAIRAAKEEESNVDVFTLINNQLAVHGQALNGGSGKKQSKDSAEGKKVDRRTLIAYEDEVKDLKLRVEKLEAIVNINRKEKAVYEAAMRKLAETRKALAEAEATHASASNAVVSKEKEKRWLKF* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0214 491 MobiDBLite consensus disorder prediction 337 365 - -
Amo01g0214 491 SUPERFAMILY CCCH zinc finger 141 165 IPR036855 GO:0046872
Amo01g0214 491 MobiDBLite consensus disorder prediction 337 353 - -
Amo01g0214 491 Gene3D - 117 177 - -
Amo01g0214 491 MobiDBLite consensus disorder prediction 470 491 - -
Amo01g0214 491 SMART c3hfinal6 140 166 IPR000571 GO:0046872
Amo01g0214 491 ProSiteProfiles Zinc finger C3H1-type profile. 140 167 IPR000571 GO:0046872
Amo01g0214 491 Pfam CCCH-type zinc finger 145 165 IPR041367 -
Amo01g0214 491 ProSiteProfiles G-patch domain profile. 293 339 IPR000467 GO:0003676
Amo01g0214 491 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 491 - -
Amo01g0214 491 Coils Coil 420 447 - -
Amo01g0214 491 Pfam G-patch domain 293 335 IPR000467 GO:0003676
Amo01g0214 491 Coils Coil 451 485 - -
Amo01g0214 491 SMART G-patch_5 291 337 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0214 Amo-Chr1 3968011 3973719 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo01g0214 G-patch 2.1e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0214 - - gmx:100796284 713.375