Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0196 ATGTTCTCGTCTCTTTGGAAGGAAAAGAAAGAAGAATCTTCGAGAACAATGGAGATGCTGTTGACGTTGGTTCTATTCTGCATTCTTCTTCAGCCTGCAAGGGTTTCTTCAACTTCTCAAGGCATTGATCAAGGTTATATAGATTCAAATGCTGGAAGAACTCTGCAGCAGGAACAGGATGGTAATCATCAAATACATTGCTCTAGAGAAAGAAGCAGAGCAGCACAGAAGATCATTCAGGAGTATTTGATGCCGTTCGTGGAGAAAGAAAAATATCATATCTCAAGAAGTTGTAAGTTTCACCCTGACAATGATCTATACAGAGATCAGGAACAACATAAATCCCACATTAACATAAATGAATGGCAATGTGGTTACTGTAAGAAAATTTTCTATGAAGAGAAATATCTTGACCAACATTTTGATAACAGACACTCCAATTTGCTAAATTTGAATCAGAGCCAGTGCTTAGCAGATCTATGTGGCGCATTGCACTGTGACATTGAAATCAATTCTGGGTTGAAAAAATCAAAATGTAATCCTGCTGCTGCTGCAAGAAATAAACATCTGTGCGAGAGCTTAGCAGATAGTTGTTTTCCTGTTAATGACGGTCCTGCAGCAAGCCGACTCCATGAATTCTTCTTGCACCAATTCTGTGATGCGCACAGCTGCACTGGAAGCAGGAAACCTTTCTCCAGAGGCCGCCGGAAGAAGACAAATGCATTCTACATCGTTGCTTCCATTTTGCTTTTGATGCTGCTGCTACTTTACTATCTCTATATCTACTTATATCAGAGAGGGATGAAAAGGGAAACTCAACTGTTGAGGCGCATCACTCAAACTGGCAGAAAGAAAAAACCATCTTAA 867 0.4002 MFSSLWKEKKEESSRTMEMLLTLVLFCILLQPARVSSTSQGIDQGYIDSNAGRTLQQEQDGNHQIHCSRERSRAAQKIIQEYLMPFVEKEKYHISRSCKFHPDNDLYRDQEQHKSHININEWQCGYCKKIFYEEKYLDQHFDNRHSNLLNLNQSQCLADLCGALHCDIEINSGLKKSKCNPAAAARNKHLCESLADSCFPVNDGPAASRLHEFFLHQFCDAHSCTGSRKPFSRGRRKKTNAFYIVASILLLMLLLLYYLYIYLYQRGMKRETQLLRRITQTGRKKKPS* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0196 288 ProSitePatterns Zinc finger C2H2 type domain signature. 124 145 IPR013087 -
Amo01g0196 288 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 22 288 - -
Amo01g0196 288 PANTHER ZINC FINGER PROTEIN-RELATED 22 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0196 Amo-Chr1 3303100 3306715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0196 40 288 C2H2 Transcription Factor Family AT5G63280 59.761 4.93e-109 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0196 - - lang:109338698 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0522 11 9094435 9098586 Amo01g0196 01 3303100 3306715 hybridization