Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0188 ATGGAAAACATGAATAAGGATGCAGAGAATGATGCAAACAGTTTCACTGCAATGGGGAAATGCGTGGGAGATGGTGGCAATAATAGTGGTGGCGAAGACGGTGGTGGGGCGACAGCGATAGGCGAGGTGGCTTTGAAAAAGGGTCCTTGGACGACAATAGAAGATGCAATTCTAGTTGATTACGTGACAAAGCACGGTGAAGGAAATTGGAATGCAGTGCAAAGGAACACAGGGTTGGCTCGATGTGGAAAAAGTTGCAGGCTGAGATGGACAAACCATTTGAGACCAAATCTGAAGAAAGGTGCTTTCTCACCTGAAGAAGAAAAGCTCATCATTGAATTCCATTCTCAGTTTGGCAACAAATGGGCTCGAATGGCTGCTTTGTTGCCTGGAAGAACTGACAACGAAATAAAAAATTATTGGAACACAAGGGTGAAGAGAAGGCAAAGGCAAGGTCTTCCTCTATACTCAGATGACCCTAATCGTTCCATTACTACAAGTACACCCACCACCAATGTAACCTATGTCGGTGAAAACTTCACCAACAACGCTCCCATAACCATGTTCGAGTTTATCAAACAGAGTTATCCTCATTCTCCATCTCCACGACATCATTCTCCTTTAACTTCTCCGCTACAACACAGGGCATCATCCTATTCTCATATGCTTTCCCCTCTATCCTCTCCAGCTCACTCCCCATTGTCCTCACCTGCAACTTCTTTGCCTCTCTCCTTCACCTTCCAGAGACCTGCACCATTGTTGTACAACCCTCTTAGCTTCAAGCGTTACCGCTCAACCCCAAGTTGTAACCCTAATACCTCCCCTATGATGAATAATCCAACCCACTTATCTGACATTGATAATGGGTTCCAATTCCCAATGCAGCTCAATTCGTCTTCTTTCTCCCACTTCTTTCAAAATCCGACGTTGTTGGATCTTGAAAGAAGTGGGTCCTCGTTGACGTCTTCTCCATCTAATGCTCAAAGCAAGATGCAACTTCTTTCGAATCAAATTCCGTTGTCGTTGCAAACGCAACAAATGGAGCCATTGGAAGTTAATTACGATATTGAGTACAATAATGACCCTAATTCTTTGAGTGCAATACTAAAACAGAAGGAAGAAGCAACTAACCTAAACCAATCCATGAATGAGGATTTATCAACATTTCTCACTGTAGTGCCTTCAATCATGCAAGACCAGCAAAATTGGCAATATAATTATTCAACAGAAGTTTCCGATAATGTCCAATCTTCTCATGTCATCATAGATGACAATTTTGGATTTGATATCAAGCCCAAACCTTCATTGTTTCCTCTTAGTATTGCTACAAACCATAATGATAATAGAGGATGTTACACATGGGATAATTTATCTAGCCAATGTTAA 1386 0.4206 MENMNKDAENDANSFTAMGKCVGDGGNNSGGEDGGGATAIGEVALKKGPWTTIEDAILVDYVTKHGEGNWNAVQRNTGLARCGKSCRLRWTNHLRPNLKKGAFSPEEEKLIIEFHSQFGNKWARMAALLPGRTDNEIKNYWNTRVKRRQRQGLPLYSDDPNRSITTSTPTTNVTYVGENFTNNAPITMFEFIKQSYPHSPSPRHHSPLTSPLQHRASSYSHMLSPLSSPAHSPLSSPATSLPLSFTFQRPAPLLYNPLSFKRYRSTPSCNPNTSPMMNNPTHLSDIDNGFQFPMQLNSSSFSHFFQNPTLLDLERSGSSLTSSPSNAQSKMQLLSNQIPLSLQTQQMEPLEVNYDIEYNNDPNSLSAILKQKEEATNLNQSMNEDLSTFLTVVPSIMQDQQNWQYNYSTEVSDNVQSSHVIIDDNFGFDIKPKPSLFPLSIATNHNDNRGCYTWDNLSSQC* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0188 461 SMART sant 99 147 IPR001005 -
Amo01g0188 461 SMART sant 46 96 IPR001005 -
Amo01g0188 461 MobiDBLite consensus disorder prediction 197 235 - -
Amo01g0188 461 Gene3D - 46 99 - -
Amo01g0188 461 Gene3D - 102 148 - -
Amo01g0188 461 MobiDBLite consensus disorder prediction 199 235 - -
Amo01g0188 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 149 IPR017930 -
Amo01g0188 461 ProSiteProfiles Myb-like domain profile. 95 145 IPR001005 -
Amo01g0188 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 94 IPR017930 -
Amo01g0188 461 Pfam Myb-like DNA-binding domain 47 94 IPR001005 -
Amo01g0188 461 Pfam Myb-like DNA-binding domain 100 143 IPR001005 -
Amo01g0188 461 SUPERFAMILY Homeodomain-like 45 141 IPR009057 -
Amo01g0188 461 Coils Coil 365 385 - -
Amo01g0188 461 ProSiteProfiles Myb-like domain profile. 42 94 IPR001005 -
Amo01g0188 461 CDD SANT 49 94 IPR001005 -
Amo01g0188 461 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 25 418 - -
Amo01g0188 461 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 25 418 - -
Amo01g0188 461 CDD SANT 102 143 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0188 Amo-Chr1 3242947 3244995 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0188 34 156 MYB Transcription Factor Family AT4G26930 75.397 2.82e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo01g0188 Myb_DNA-binding 2.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0188 - K09422 ahf:112723793 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0532 11 9298951 9301172 Amo01g0188 01 3242947 3244995 hybridization