Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0187 ATGATGGAAAATATTAATAAAGATGCAGAGAACGATGCAAACAGTTTCACTGCAATGAGGGGAAGCATGGAAGCAGGTGACGGCTGCTGTGGCGATAGCGGTGGTGCGACRGCKGCGGGAGATGAGGTGGCTTTGAAAAAAGGTCCTTGGACAGCCGCAGAGGATGCAATTTTAGTTGATTACGTAACGAAACACGGTGAAGGGAACTGGAACGCCGTACAAAGAAACACAAAGTTGGCTCGATGTGGAAAGAGTTGTCGGCTAAGATGGGCTAACCATTTGAGACCAAATTTGAAGAAAGGTGCTTTCTCCCCTGAAGAAGAAAAGCTCATCATTGAACTCCATGCTCAATTTGGAAACAAATGGGCTCGAATGGCTGCATTGTTGCCCGGAAGAACTGACAACGAAATAAAGAATTATTGGAACACAAGGGTGAAGCGGAGGCAAAGGCAAGGGCTTCCTCTGTACTCAGATGACCCTGATCGTCCGACTATATCAAGCACACCCACCACCCCTATAACTCATCTAGGAACAAACTTCATCAACAATTCTCCCACAAGCAAGTTTGAGTTTCTCCACCACCAAAGTTATCTTCATTCTCCATCTCCGCATCATCACCACCACCTCAACCATTCTCCTTTAACATCACCACTTCACAGAGCTCCGTCTTATTCCCCTTTATCCTCTTCATCACTTCACACACCACTCTCCACTCCCATTTCATCTTCACCTCTCTCCTTCACCTTCCATAGACCTGCACCCTTGTTGTGCAACCCTCTTCGCTTTAAGCGTTACCGTTCAACTTCAACTGTGAATCCAACCACACCAACCACGCCAACCCACTTATCTGATCTTGATAATGGGTTTAGGTTCCCAGTTCATCTCAACTCTTCTTCTTCTTCTTCTTTCTCCCATTTCTTTCAGAACCCATCCTTGTTGGATCCTGAAAGAAACATGGTATGTTCGACTTCTCCTTCTAATTTCCTAAGCAAGATAGAGCTCCCTTCAAACCAATTTTCATTGTCATCGCAACCGCACCAAATAGAGCCATCAGAGTTTAAACTAGATGATGTTGAGTATAATAATGACCCTAACTGTTTAAATACAAGTAATGGGTTGGTTGGGGATATTCTATCTGAAGCTCAAACCATGGCTTCTAGTCATCAGAATTTTAAAAAGCGAAGCTACTTCGGCTTGAATGAAGGGCAAGATGAGGCTTTTGAGGGTTGCCAAAGCTTTGATGACTCGGTTCTTAGTTCTCTTTATTGGTCTTCTAGTTCAGGACTAAAACCAAAGGAAGAAGCAACAAACTTAGAGAAATCCATGAATGAGGACTTGTCAACATTGCTCCCTGTAATGCCTTCAACCTTACAATGCCAACAGAATTGGCAGCATAATAATACAACAGAAGTCTCAAATAATGTCCAATCTTCTTGTCTTATGACAGAYGACAATTTTGGACTTGATATAAAGCCTGTAGCTTCATTATTTCCTCTCAACAATGCMACKAACCATGATAATAATAATAATAACACAGGATGTTACTCATGGGACAATTTATCTGGGCTATGTTGA 1575 0.426 MMENINKDAENDANSFTAMRGSMEAGDGCCGDSGGATAAGDEVALKKGPWTAAEDAILVDYVTKHGEGNWNAVQRNTKLARCGKSCRLRWANHLRPNLKKGAFSPEEEKLIIELHAQFGNKWARMAALLPGRTDNEIKNYWNTRVKRRQRQGLPLYSDDPDRPTISSTPTTPITHLGTNFINNSPTSKFEFLHHQSYLHSPSPHHHHHLNHSPLTSPLHRAPSYSPLSSSSLHTPLSTPISSSPLSFTFHRPAPLLCNPLRFKRYRSTSTVNPTTPTTPTHLSDLDNGFRFPVHLNSSSSSSFSHFFQNPSLLDPERNMVCSTSPSNFLSKIELPSNQFSLSSQPHQIEPSEFKLDDVEYNNDPNCLNTSNGLVGDILSEAQTMASSHQNFKKRSYFGLNEGQDEAFEGCQSFDDSVLSSLYWSSSSGLKPKEEATNLEKSMNEDLSTLLPVMPSTLQCQQNWQHNNTTEVSNNVQSSCLMTDDNFGLDIKPVASLFPLNNATNHDNNNNNTGCYSWDNLSGLC* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0187 524 Pfam Myb-like DNA-binding domain 100 143 IPR001005 -
Amo01g0187 524 Pfam Myb-like DNA-binding domain 47 94 IPR001005 -
Amo01g0187 524 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 149 IPR017930 -
Amo01g0187 524 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 32 519 - -
Amo01g0187 524 ProSiteProfiles Myb-like domain profile. 42 94 IPR001005 -
Amo01g0187 524 MobiDBLite consensus disorder prediction 200 235 - -
Amo01g0187 524 MobiDBLite consensus disorder prediction 153 177 - -
Amo01g0187 524 ProSiteProfiles Myb-like domain profile. 95 145 IPR001005 -
Amo01g0187 524 Gene3D - 46 99 - -
Amo01g0187 524 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 94 IPR017930 -
Amo01g0187 524 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 32 519 - -
Amo01g0187 524 MobiDBLite consensus disorder prediction 216 235 - -
Amo01g0187 524 SMART sant 46 96 IPR001005 -
Amo01g0187 524 SMART sant 99 147 IPR001005 -
Amo01g0187 524 CDD SANT 49 94 IPR001005 -
Amo01g0187 524 MobiDBLite consensus disorder prediction 161 177 - -
Amo01g0187 524 SUPERFAMILY Homeodomain-like 45 141 IPR009057 -
Amo01g0187 524 Gene3D - 102 148 - -
Amo01g0187 524 CDD SANT 102 143 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0187 Amo-Chr1 3233591 3236194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0187 33 156 MYB Transcription Factor Family AT3G11440 77.419 1.73e-65 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo01g0187 Myb_DNA-binding 3.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0187 - - ahf:112720267 698.738