Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0183 ATGTTTTCCTCATCACTCTCAACTTCCCTTCCTCCAAAACCTTACCTCTCTCACCCACTCTCCCCCTCACTCCACCAACCACCGTTCCCTCACTCTCGCCCTCCGTTTCCTCCTTCCATTCGCTGCGGCATTAGGGAACTCCGAGAAAGAATCGACATCGTTAAGAACACTCACAAGATCACTGAAGCAATGAAGCTCGTCGCGGCYGCCAGGGTCCGACGGGCCCAAGAAGCYGTCCTAAACGGCAGACCCTTCGCCGAAACGCTCGTTGAAGTCTTGCACGACATCAACTGCCGTCTCCGAGACGACGACGTCATCGTCCCCCTAACGGACGTCAGGCCCGTCAACTCCGTCGCCCTCGTTGTCGTCACCGGAGACCGCGGCCTCTGTGGCGGTTTCAATAACRCCGTCTTGAAGAAAGCCGAAGYTCGGATCCAACAGCTACACAAGCTTGGCTTGAATTGCGTTGTGATTAGCGTTGGGAAGAAGGGGAACGCGTTTTTCAGCCGCAAGGGAAGTGTTAGGGTTGATAGGTTCGTTGAATGTGGGAGCTTCCCCACTGTGAAAGAAGCTCAAATCATTGCTGATGATGTGTATTCACTGTTTGTTACAGAGGAGGTTGACAAGGTTGAGATTGTTTACACCAAGTTTGTGTCATTGGTGAAGTTTGATCCTGTGATTCAAACTCTGTTGCCGTTAACGGCTAAAGGCGAGGTTCGCGATGTGAATGGRAACTGCATTGATGCCATTGATGACGAATACTTTAGGTTGACTACAAAGGAAGGGAAGTTGGCAGTGGAGAGGGATGTTGCTGTCAGGGAATTTGCTACGCCGCCRATTATGGAGTTCGAGCAAGATCCGGYTCAGATTCTTGATGCTATGTTGCCTCTGTATTTGAACAGCCAGATCTTGAGGGGTTTGCAGGAATCACTAGCGAGTGAGCTTGCTGCTAGGATGGCTGCAATGTCTAATGCAACCGATAATGCTRTYGAATTGAAGAAGAATCTKTCGGTTGCTTATAATCGTGAACGGCAGGCAAAGATCACAGGGGAGATATTGGAGATTGTGGCCGGAGCTGAGGCACTAATACCAATTGCTTATGTTTTGCTAGTTTTCTAA 1119 0.4951 MFSSSLSTSLPPKPYLSHPLSPSLHQPPFPHSRPPFPPSIRCGIRELRERIDIVKNTHKITEAMKLVAAARVRRAQEAVLNGRPFAETLVEVLHDINCRLRDDDVIVPLTDVRPVNSVALVVVTGDRGLCGGFNNXVLKKAEXRIQQLHKLGLNCVVISVGKKGNAFFSRKGSVRVDRFVECGSFPTVKEAQIIADDVYSLFVTEEVDKVEIVYTKFVSLVKFDPVIQTLLPLTAKGEVRDVNGNCIDAIDDEYFRLTTKEGKLAVERDVAVREFATPPIMEFEQDPXQILDAMLPLYLNSQILRGLQESLASELAARMAAMSNATDNAXELKKNLSVAYNRERQAKITGEILEIVAGAEALIPIAYVLLVF* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0183 372 Gene3D ATP synthase, gamma subunit, helix hairpin domain 264 362 - -
Amo01g0183 372 Gene3D ATP synthase, gamma subunit, helix hairpin domain 42 104 - -
Amo01g0183 372 PANTHER ATP SYNTHASE GAMMA CHAIN 38 362 IPR000131 GO:0015986|GO:0045261|GO:0046933
Amo01g0183 372 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 38 362 - -
Amo01g0183 372 MobiDBLite consensus disorder prediction 13 37 - -
Amo01g0183 372 Coils Coil 322 329 - -
Amo01g0183 372 Coils Coil 331 342 - -
Amo01g0183 372 Hamap ATP synthase gamma chain [atpG]. 41 362 IPR000131 GO:0015986|GO:0045261|GO:0046933
Amo01g0183 372 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 44 362 IPR000131 GO:0015986|GO:0045261|GO:0046933
Amo01g0183 372 CDD F1-ATPase_gamma 44 359 IPR000131 GO:0015986|GO:0045261|GO:0046933
Amo01g0183 372 ProSitePatterns ATP synthase gamma subunit signature. 348 361 IPR023632 -
Amo01g0183 372 Gene3D - 107 235 - -
Amo01g0183 372 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 43 362 IPR035968 GO:0015986|GO:0045261|GO:0046933
Amo01g0183 372 Pfam ATP synthase 44 362 IPR000131 GO:0015986|GO:0045261|GO:0046933
Amo01g0183 372 MobiDBLite consensus disorder prediction 15 37 - -
Amo01g0183 372 PRINTS ATP synthase gamma subunit signature 115 134 IPR000131 GO:0015986|GO:0045261|GO:0046933
Amo01g0183 372 PRINTS ATP synthase gamma subunit signature 340 361 IPR000131 GO:0015986|GO:0045261|GO:0046933
Amo01g0183 372 PRINTS ATP synthase gamma subunit signature 208 225 IPR000131 GO:0015986|GO:0045261|GO:0046933
Amo01g0183 372 PRINTS ATP synthase gamma subunit signature 309 328 IPR000131 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0183 Amo-Chr1 3188353 3189707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0183 13 362 Primary Pumps ATPases AT1G15700 69.972 7.52e-170 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0183 K02115 - qsu:112000322 477.248