Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0180 ATGGATGAACCCATGGAAAGTGGTGAGAGGCCAGTCTTCAAAGATATTAGACGCTACTTCTGTGAATACTGTGGCATTTGCAGGTCTAAAAAGATCTTAATTACCTCCCACATCAATTCACAACACAAGGACGAGTTGGAAAAAGCTAGAGCTGAAGGAAATAATGAAGCACATTGCGAAAAGCCCAACAACACTTGCCAACAATGTGGTGCTAGCTTCAAAAAACCTGCCTACTTGTTGCAGCACATGCAAAGCCATTCACTTGAGAGGCCGTATGTGTGTATGGTTGATGATTGTCAGGCAAGTTACAGAAGAAAGGATCATTTGAATCGTCACCTTCTACAGCATGAAGGGAAAACTTTTAAATGTCCAATGGAGAATTGCAACCTAATCTTCTCAATAAAAGGTAATATGGCAAGACATGTTAAAGAGATTCATGATGAAGGATCTACATCCACAAATGTAGAAAGTAAGCAGTTTGTGTGCCCAGAAACTGGCTGTGGAAAGGTTTTCAAGTTTGCATCAAAGCTTCGTAAACATGMAGATTCTCATGTTAAGCTGCAGTCGGTAGATGTAGTGTGCTTGGAGCCTGGTTGCATGAAACATTTCACTAATAACCAGTGCCTTAAAGAACATATTGAATCCTGTCATCAATATGTAACCTGCGACACTTGTGGAAGTAGACAACTGAAAAAGAATATTAAAAGGCACCTTCGCACACATGAAGCTGACAAATCATTGGCAGAGTTTAAATGTGAATTTAAGGGCTGTAGCTGCAAATTCTCAAGTAAATCTAATCTCGTTACACATAAGAAGGCCGTGCACTTTAAAGAAAAGCCCTTTGTGTGTGGTTTTCCTGATTGTGGCCTGAGATTTGCTTACAAACATGTCAGAGATAAACACGAAAAAACTGGGAAACATGTTTTTACCCATGGGGATTTTGAAGAAGCTGATGAACAATTCAGGTCAAGGCCAAGGGGTGGGAGGAAGAGAGTGTGTCCTACTGTAGAAATGTTGGTCAGGAAAAGGGTTACACCACCTAGTCAATTGGAGAATTTGTTATTTATGCAGGAGTGA 1077 0.4039 MDEPMESGERPVFKDIRRYFCEYCGICRSKKILITSHINSQHKDELEKARAEGNNEAHCEKPNNTCQQCGASFKKPAYLLQHMQSHSLERPYVCMVDDCQASYRRKDHLNRHLLQHEGKTFKCPMENCNLIFSIKGNMARHVKEIHDEGSTSTNVESKQFVCPETGCGKVFKFASKLRKHXDSHVKLQSVDVVCLEPGCMKHFTNNQCLKEHIESCHQYVTCDTCGSRQLKKNIKRHLRTHEADKSLAEFKCEFKGCSCKFSSKSNLVTHKKAVHFKEKPFVCGFPDCGLRFAYKHVRDKHEKTGKHVFTHGDFEEADEQFRSRPRGGRKRVCPTVEMLVRKRVTPPSQLENLLFMQE* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0180 358 SUPERFAMILY beta-beta-alpha zinc fingers 72 124 IPR036236 -
Amo01g0180 358 SMART c2h2final6 220 241 IPR013087 -
Amo01g0180 358 SMART c2h2final6 192 217 IPR013087 -
Amo01g0180 358 SMART c2h2final6 19 42 IPR013087 -
Amo01g0180 358 SMART c2h2final6 250 275 IPR013087 -
Amo01g0180 358 SMART c2h2final6 281 307 IPR013087 -
Amo01g0180 358 SMART c2h2final6 64 86 IPR013087 -
Amo01g0180 358 SMART c2h2final6 121 146 IPR013087 -
Amo01g0180 358 SMART c2h2final6 92 116 IPR013087 -
Amo01g0180 358 SMART c2h2final6 160 184 IPR013087 -
Amo01g0180 358 Gene3D Classic Zinc Finger 278 304 - -
Amo01g0180 358 Gene3D Classic Zinc Finger 119 153 - -
Amo01g0180 358 ProSitePatterns Zinc finger C2H2 type domain signature. 283 307 IPR013087 -
Amo01g0180 358 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Amo01g0180 358 Pfam Zinc finger, C2H2 type 160 184 IPR013087 -
Amo01g0180 358 Pfam Zinc finger, C2H2 type 65 86 IPR013087 -
Amo01g0180 358 Pfam Zinc finger, C2H2 type 92 116 IPR013087 -
Amo01g0180 358 ProSitePatterns Zinc finger C2H2 type domain signature. 194 217 IPR013087 -
Amo01g0180 358 ProSitePatterns Zinc finger C2H2 type domain signature. 162 184 IPR013087 -
Amo01g0180 358 ProSitePatterns Zinc finger C2H2 type domain signature. 94 116 IPR013087 -
Amo01g0180 358 Gene3D Classic Zinc Finger 93 118 - -
Amo01g0180 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 121 IPR013087 -
Amo01g0180 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 151 IPR013087 -
Amo01g0180 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 189 IPR013087 -
Amo01g0180 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Amo01g0180 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 250 280 IPR013087 -
Amo01g0180 358 PANTHER ZINC FINGER PROTEIN 9 349 - -
Amo01g0180 358 SUPERFAMILY beta-beta-alpha zinc fingers 119 147 IPR036236 -
Amo01g0180 358 Gene3D Classic Zinc Finger 10 92 - -
Amo01g0180 358 SUPERFAMILY beta-beta-alpha zinc fingers 231 285 IPR036236 -
Amo01g0180 358 Gene3D Classic Zinc Finger 154 185 - -
Amo01g0180 358 PANTHER - 9 349 - -
Amo01g0180 358 ProSitePatterns Zinc finger C2H2 type domain signature. 252 275 IPR013087 -
Amo01g0180 358 ProSitePatterns Zinc finger C2H2 type domain signature. 123 146 IPR013087 -
Amo01g0180 358 SUPERFAMILY beta-beta-alpha zinc fingers 154 185 IPR036236 -
Amo01g0180 358 Gene3D Classic Zinc Finger 218 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0180 Amo-Chr1 3167532 3169687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0180 88 310 C2H2 Transcription Factor Family AT1G72050 51.812 5.34e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo01g0180 zf-C2H2 0.0027 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0180 K09191 - gmx:100801812 555.829