Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0178 ATGAGTGCTGTGGGTTTTGACATTGGTAATGAGAACTGTGTCATTGCTGTGGTAAAGCAAAGGGGGATCGATGTTTTGCTGAATGACGAGTCCAAGCGCGAAACCCCTTCTGTGGTCTGYTTTGGAGAGAAGCAACGGTTTTTGGGCTCTGCTGCCGCTGCTTCTGCTATGATGCACCTAAAGTCAACGGTGTCRCAAGTGAAGAGACTGATTGGGAGGAAATTTGTCGATGATGATGTTGAAAGGGAGCTGAAAATGCTTCCCATTGCCACTTCTCAAGGCCCGGATGGCGGCATTTTGATTCACTTGGAATACTTGAACAGGACTCATATGTTCACACCAGTKCAGATAATGTCCATGCTCTTGGCTCACTTGAAGACGATGACAGAGAAAGATCTGGGTTTGCCTGTTTCGGATTGCGTTATTGGGATCCCATCATACTTTAATGACTTACAGAGAAGGGCATATCTGGATGCAGCAAAAATTGCTGGGTTGAAGCCTTTGAGATTGATCCATGATTGTACTGCAACTGCTCTTAGCTATGGAATTTATAAAACAGATATTCAAAGTACAGGTTCAATTARTGTTGCATTTATTGACATTGGTCACTGTGATACTCAGGTCTCAATTGCAGCATTTGAGTTTGGGCAAATGAAGATACTTTCGCATGCATCTGACAGGAGCTTAGGAGGGAGGGATTTTGATGAAGTTCTATTTAATCATTTTGCAGCACAATTTAAGGAGAAGTACAACATTGAYGTGTATTCTAATTCTAAAGCAAGCATTAGGTTACGCGCAGCATGCGAGAAGTTGAAGAAAGTTTTGAGTGCAAATCTAGAGGCACCTCTAAATATTGAATGCTTGATGGATGAGAAAGATGTTAAGGGCTTTATCACGAGGGAAGAATTTGAGAAGCTGGCATCGGAATTATTGGAAAGAGTTTCTGTTCCTTGCAAAAGAGCATTAGTTGATGCAAACTTGACTGCAGAAAAAATTTCTTCTGTGGAACTTGTTGGCTCGGGTTCTAGGATTCCAGCTATTGCTAAGATATTAACATGTCTTTTCAAGAAAGAACCCAGCCGAAAGCTGAATGCAAGTGAGTGTGTAGCTCGAGGTTGTGCTTTACAGTGTGCAATGCTCCATCCCAATTACCGCGTGAGAGAATATGAGGTCCGGGATTCTTTTCCTTTTTCTGTTGGACTTTCATCAGATGAAGGTCCAATTAGTGCAGGATCAAATAATGTACTATTCCCCAAAGGCCATCCCATTCCGAGTGTTAAAGTCCTCACATTGCATCGGACCAATTTGTTCAATTTGGAAGCCTTCTATGCTAATCAAAATGAACTACCACCTGGGGCATCTCCTAAACTTGGTTGCTTCACGATTGGTCCTTTCCAAGGATCCAATGGTAGTAAGACAAAAGTTAAAGTTAGAGTTCAACTAGATTTGCATGGCATTGTCAGTATAGAATCTGCTACATTGATCAGGGATCAGGTGGGYGATTCAGTTGCAACGGGTGATTATCATTCAAATTCTGATCCAATGGATGTTGATATTCCAGATACAGTTGCCAATGGAGATGATGATACTTCTGCTGATGGTGCAAGGAAAGATAAAGCCAACAGAAGGCTTAATGTGCCAGTAAGTGAGAATATTGATGGTGCAATGTCAAAGGCTGAAATATCGGAAGCTTATGAAAAAGAACTACAGTTGGCYCAACAGGACAGAACTGTAGAGCTAACCAAAGAAAAGAAGAACACCTTGGAGTCTTATGTCTATGATATGAGAAATAAGCTATTCAACACATATCGGAGCTTTGCAACTGATCAAGAGAGGGATGACATATCCAAGAGGCTTCAAGAGACTGAGGAGTGGCTTTATGAGGATGGTTATGATGAAACTGAACTTGCTTACACTACAAAACTAGAAGACCTAAAGAAGCTGGTGGATCCAATCGAGAATAGGTATAAAGATGAAGAAGGAAGAGATCAAGCCAGAAGAGATTTGTTAAAATGCATTTTAGAGCTTCGCGGGACTGCAGATTCCCTTCCACCCCAAGACAAAGAACTGGTATTGAATGAGTGTAATAAAGCAGAGCAGTGGCTAAGTGAGAAGATGCAGCAACAAGAATCTTKGCCCAAGAACATTGACCCAATATTTTGGTCAAGTGATATTCAGGGCAAGGCAGAGGATTTAAAAATAACATGTCAACGGAAATTGGATTCCAGGACGTCTCCAATGGAAGAAGACGTTGGCGAAGACAAGCCGGATGCTTCAAATCAGCCATGA 2289 0.4163 MSAVGFDIGNENCVIAVVKQRGIDVLLNDESKRETPSVVCFGEKQRFLGSAAAASAMMHLKSTVSQVKRLIGRKFVDDDVERELKMLPIATSQGPDGGILIHLEYLNRTHMFTPVQIMSMLLAHLKTMTEKDLGLPVSDCVIGIPSYFNDLQRRAYLDAAKIAGLKPLRLIHDCTATALSYGIYKTDIQSTGSIXVAFIDIGHCDTQVSIAAFEFGQMKILSHASDRSLGGRDFDEVLFNHFAAQFKEKYNIDVYSNSKASIRLRAACEKLKKVLSANLEAPLNIECLMDEKDVKGFITREEFEKLASELLERVSVPCKRALVDANLTAEKISSVELVGSGSRIPAIAKILTCLFKKEPSRKLNASECVARGCALQCAMLHPNYRVREYEVRDSFPFSVGLSSDEGPISAGSNNVLFPKGHPIPSVKVLTLHRTNLFNLEAFYANQNELPPGASPKLGCFTIGPFQGSNGSKTKVKVRVQLDLHGIVSIESATLIRDQVGDSVATGDYHSNSDPMDVDIPDTVANGDDDTSADGARKDKANRRLNVPVSENIDGAMSKAEISEAYEKELQLAQQDRTVELTKEKKNTLESYVYDMRNKLFNTYRSFATDQERDDISKRLQETEEWLYEDGYDETELAYTTKLEDLKKLVDPIENRYKDEEGRDQARRDLLKCILELRGTADSLPPQDKELVLNECNKAEQWLSEKMQQQESXPKNIDPIFWSSDIQGKAEDLKITCQRKLDSRTSPMEEDVGEDKPDASNQP* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0178 762 Gene3D - 186 360 - -
Amo01g0178 762 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 558 656 IPR029048 -
Amo01g0178 762 MobiDBLite consensus disorder prediction 736 762 - -
Amo01g0178 762 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 385 518 IPR029047 -
Amo01g0178 762 Pfam Hsp70 protein 3 656 IPR013126 GO:0005524|GO:0140662
Amo01g0178 762 CDD HSPA4_like_NDB 2 380 - -
Amo01g0178 762 PANTHER HEAT SHOCK 70 KDA PROTEIN 1 760 - -
Amo01g0178 762 Gene3D - 38 113 - -
Amo01g0178 762 Gene3D - 556 667 IPR029048 -
Amo01g0178 762 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 385 589 IPR029047 -
Amo01g0178 762 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Amo01g0178 762 PRINTS 70kDa heat shock protein signature 472 488 - -
Amo01g0178 762 PRINTS 70kDa heat shock protein signature 30 42 - -
Amo01g0178 762 PRINTS 70kDa heat shock protein signature 388 407 - -
Amo01g0178 762 PRINTS 70kDa heat shock protein signature 2 15 - -
Amo01g0178 762 PRINTS 70kDa heat shock protein signature 332 348 - -
Amo01g0178 762 PRINTS 70kDa heat shock protein signature 363 383 - -
Amo01g0178 762 PRINTS 70kDa heat shock protein signature 140 160 - -
Amo01g0178 762 MobiDBLite consensus disorder prediction 503 541 - -
Amo01g0178 762 Gene3D Actin; Chain A, domain 4 230 313 - -
Amo01g0178 762 Gene3D - 5 374 - -
Amo01g0178 762 MobiDBLite consensus disorder prediction 736 756 - -
Amo01g0178 762 PANTHER HSC70CB, ISOFORM G-RELATED 1 760 - -
Amo01g0178 762 SUPERFAMILY Actin-like ATPase domain 193 381 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0178 Amo-Chr1 3146275 3153981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0178 3 652 Calmodulin-binding Proteins AT1G16030 30.455 1.57e-87 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0178 K09489 - gmx:100808218 1174.84