Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0167 ATGTCGCGGACGCTGGTGCAGCCGATAGGGCAGAAGAGGCTGACCAACGTGGCCGTCGTGCGACTCAAGAAGCATGGCATGCGCTTTGAGATCGCCTGCTACCCCAATACTGTCCTCGCTTGGCGTTCCGGCGTGGAGAAGGACCTGGATGAAGTGTTGCAGTCACATACTGTTTATTCCAATGTTTCCAAAGGTGTTCTTGCCAAGTCAAAGGATTTGATTGCTGCTTTTGGGACTGATGATCAGACCAAGATATGCTTAGAGGTTTTGAAGAAAGGGGAACTTCAGGTTGCCGGGAAAGAAAGGGAATCCTTGCTGTCAAGTCAGTTCAGGGATATTGCCACCATTGTGATGCAGAAGACATACAATCCTGAGACGCAGCGCCCTTACACTATTAGCATGATTGAGCGCCTGATGAGGGACATTCATTTTGCTGTTGATCCAAATAGCAGTTCCAAGAAGCAGGCTTTGGAGTTGATTCAGGAGCTTCAAAAGCACTACCCTATAAAACGATGTCCGTTAAGAATCCGAGTTGCTGCTCCTGAGGAGGAAGTGCCTGCCCTTTTAGAAAAGTTGAATGAGTGGAAGTCTACCATTATTTCTAAAGAAGGATCTTCTGGTCAGCTATCTGTTATCTTTGAATTGGAACCTGGTCTATATAAGGGTTGTCATGACTTCGTTGTGAACAACATGCATGGAAGATTTGAGGTTCTTGCACACTCTCTTTATGTGGATGGGGATACCCAGGTAGAACAATACACTGATGATTATGAGGATATGCCTCCACCGTTGACCAAAGAAACTCGCGAATCTGTTCTTGAATTGAATGATAAACTTCAAAAGCAGACAATTTCATCTACGAGTAGGCTGCCTCCTGAGATGCAACAACAAAAGGCAAACAAGTGCAGCACATGCAATGTTTCTTTTGAGGACTCTAAGCAGTACAGGGAACACCACAAGAGTGAGTGGCACAAGCATAATATGAAGCGCAAGACGAGGCAACTCCCACCCCTTACCGAGGAAGAGTGCTTGGCAGACATGGAACTGGGTGACTTAAAATCTGATTTGAAGGATTATTCATTTTGA 1086 0.4567 MSRTLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLAWRSGVEKDLDEVLQSHTVYSNVSKGVLAKSKDLIAAFGTDDQTKICLEVLKKGELQVAGKERESLLSSQFRDIATIVMQKTYNPETQRPYTISMIERLMRDIHFAVDPNSSSKKQALELIQELQKHYPIKRCPLRIRVAAPEEEVPALLEKLNEWKSTIISKEGSSGQLSVIFELEPGLYKGCHDFVVNNMHGRFEVLAHSLYVDGDTQVEQYTDDYEDMPPPLTKETRESVLELNDKLQKQTISSTSRLPPEMQQQKANKCSTCNVSFEDSKQYREHHKSEWHKHNMKRKTRQLPPLTEEECLADMELGDLKSDLKDYSF* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0167 361 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Amo01g0167 361 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Amo01g0167 361 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Amo01g0167 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 300 331 IPR013087 -
Amo01g0167 361 Gene3D Classic Zinc Finger 290 349 - -
Amo01g0167 361 Gene3D - 100 172 IPR037188 -
Amo01g0167 361 Gene3D - 174 251 - -
Amo01g0167 361 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 361 IPR039100 -
Amo01g0167 361 PANTHER BNAANNG06530D PROTEIN 1 361 - -
Amo01g0167 361 Pfam SBDS protein, C-terminal domain 175 238 IPR046928 -
Amo01g0167 361 SUPERFAMILY beta-beta-alpha zinc fingers 292 347 IPR036236 -
Amo01g0167 361 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Amo01g0167 361 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Amo01g0167 361 ProSitePatterns Zinc finger C2H2 type domain signature. 302 324 IPR013087 -
Amo01g0167 361 Gene3D - 1 96 IPR036786 -
Amo01g0167 361 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 225 IPR002140 GO:0042256
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0167 Amo-Chr1 3018231 3022045 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0167 27 361 C2H2 Transcription Factor Family AT1G43860 58.092 1.07e-143 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo01g0167 SBDS_C 4.9e-29 CL0437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0167 K14574 - gmx:100797497 627.476