Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0150 ATGGAAGAAGCAATGGCGGCAAGGTATTGGTGTCATATGTGCTCACAAATGGTGAATCCCATAACTGAAGGCGAGATCAAATGCCCATTATGCCAGAGTGGGTTTGTTGAAGAAATGAGTAACACCACTACTGTTAGCAATATGCTGGAAGCTCCTGATTTCGGCCCTGACCGGACACTTTCCCTTTGGGCTCCCATATTGTTAGGCATGTTGAGCAATCCGCATAATCGTTCCTATGACTGGAACCGCGGTCAAGGTGATAATCATACACCCATTGGTTCTCTGGGTGACTATTTCATTGGTCCTGGTTTGGATTTACTGTTGCAGCATTTGGCCGAGAATGATCCCAATAGGCACGGAACTCCACCTGCGCAGAAGGAGGCCATCGAAGCATTGCCTACCGTGACAATTGACGAGAATATGCAATGTTCTATTTGCCTTGATGATCTTGAAGTTGGTTCTGAAGCCAAACAGATGCCCTGTAAACATATGTTTCATAGTGGATGTATCCTTCCTTGGTTGGAGCTCCATAGTTCTTGTCCGGTTTGCAGGTATCAGTTGCCCGCTGATGAATCTAAGCGCGAACCGGATGCATCCTTGAGGACTAGCAGTAATCAAAGGGAGGATGAAAATACTGGACATGACAATGTTGATGGGGATATTGAAGGAAGAAATGCAAGTGGGAGTAGAAGATTCTCCTTTCCATGGCCTTTCAATGGTTTATTTTCTTCACCAAACCCTTCAGCAGCATCTTCTTCTAGCAACAATCCAAATGGAGATAATGTTACTCGATCAGAAGAGAACTGA 807 0.4511 MEEAMAARYWCHMCSQMVNPITEGEIKCPLCQSGFVEEMSNTTTVSNMLEAPDFGPDRTLSLWAPILLGMLSNPHNRSYDWNRGQGDNHTPIGSLGDYFIGPGLDLLLQHLAENDPNRHGTPPAQKEAIEALPTVTIDENMQCSICLDDLEVGSEAKQMPCKHMFHSGCILPWLELHSSCPVCRYQLPADESKREPDASLRTSSNQREDENTGHDNVDGDIEGRNASGSRRFSFPWPFNGLFSSPNPSAASSSSNNPNGDNVTRSEEN* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0150 268 MobiDBLite consensus disorder prediction 191 228 - -
Amo01g0150 268 Pfam Ring finger domain 142 184 IPR001841 -
Amo01g0150 268 SUPERFAMILY RING/U-box 132 191 - -
Amo01g0150 268 MobiDBLite consensus disorder prediction 191 225 - -
Amo01g0150 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 190 IPR013083 -
Amo01g0150 268 CDD RING-H2_RNF126_like 142 184 - -
Amo01g0150 268 ProSiteProfiles Zinc finger RING-type profile. 143 184 IPR001841 -
Amo01g0150 268 SMART ring_2 143 183 IPR001841 -
Amo01g0150 268 MobiDBLite consensus disorder prediction 243 262 - -
Amo01g0150 268 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 82 - -
Amo01g0150 268 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 82 - -
Amo01g0150 268 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 89 241 - -
Amo01g0150 268 MobiDBLite consensus disorder prediction 243 268 - -
Amo01g0150 268 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 89 241 - -
Amo01g0150 268 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0150 Amo-Chr1 2816204 2817385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0150 93 195 C3H Transcription Factor Family AT5G01980 41.667 6.67e-25 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0150 K11982 - gmx:100784876 274.633