Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0141 ATGGATTATTACTTACTTCAACATGAACCAATAATGCGAATGGCTCTACTGTTCGCCATCCCACTTTTACTTCTTCTGCCTTTGGTGTCACGAAAACTTCGTCAAACGACACCGTTTCCGCCAGGGCCAAAGGGGTTGCCAATCATTGGAAACATGAACATCATGGACCAACTTACACACCGAGGTCTTGCCAACCTGGCAAAACAATACGGCGGCGTTTTGCACCTCCGCATGGGGTTCCTCCACATGGTTGCGATTTCGAACCCGGAGGCAGCACGCCAAGTACTCCAGGTGCACGATAATATCTTCTCCAACCGCCCTGCCACCATAGCCATCAGTTACCTTTCTTACGACCGTGCTGACATGGCTTTCGCTCACTACGGCCCCTTCTGGCGTCAGATGCGTAAGCTCTGCGTCATGAAGTTATTTAGCCGTAGACGAGCGGAGTCATGGCAGTCCGTAAGAGACGAGGTTGATACGGCGGTTAAAACCGTAAGTAAAAACCTCGGGAAGTCCGTGAACATTGGTGAGCTTGTGTTTAACCTCACCAAAAATATTATTTATAGGGCCGCGTTCGGGTCTAGTTCGCAAGAAGGTCAAGATGAGTTCATTTCTATATTACAAGAGTTTTCTAAGCTCTTTGGAGCTTTTAACCTTGCGGATTTCATTCCATATCTGGGATGGATTGATCCGCAAGGAATTAACGCCCGGCTCGTCAAAGCGCGCGGGGCCTTGGATAGATTCATAGACAAGATCATTGATGAACATGTGGAGAAAAACAGGAAAAAGGGTCACGGCAAGGTTGATGAAGAAAGTGACATGGTTGATGAGTTGTTAGCGTTTTATGGTGAGGAGGCTAAGTTGAATAATGAATCTGATGATTTGCAGAACTCCATCAGACTAACAAAGGAGAATATCAAAGCCATAATCATGGACGTGATGTTCGGAGGCACGGAAACGGTGGCATCGGCGATAGAATGGGCGATGGCAGAACTCATTAGGAACCCAAATGAGCTGAAGCGCGTGCAACAAGAACTCGCCACCGTCGTTGGCCTCGACCGGCGCGTGGAGGAGGCAGACTTCGAGAAGCTTCCCTACCTGAAATGCGTGATCAAAGAAACCTTGCGCCTCCACCCGCCAATCCCCCTCCTCCTCCACGAGACAGCGGAGGATGCAACGGTGTCCGGATACTTGGTCCCGAAAGGGTCGCGCGTGATGATCAACGCGTGGGCAATAGGGAGGGACAAAGACTCGTGGGAAGACCCTGAAAGTTTTAGGCCTTCACGGTTCTTGGAGGAAGGAGTGGCGGATTTCAAGGGTAGTAACTTCGAGTTCATTCCATTCGGGTCGGGTCGGAGGTCGTGCCCCGGGATGCAATTGGGGCTTTATGCGTTGGAGTTGGCAGTGGCACACCTTCTCCATTGCTTCACGTGGGAGTTGCCTGATGGGATGAAGCCGAGTGAGATGGACATGAGTGATGTATTTGGACTCACTGCTCCTCTAGCTACTCGTCTCTTTGCTGTTCCCGCTAAGCGGGTCACCTGCCCTCTCTAA 1554 0.5051 MDYYLLQHEPIMRMALLFAIPLLLLLPLVSRKLRQTTPFPPGPKGLPIIGNMNIMDQLTHRGLANLAKQYGGVLHLRMGFLHMVAISNPEAARQVLQVHDNIFSNRPATIAISYLSYDRADMAFAHYGPFWRQMRKLCVMKLFSRRRAESWQSVRDEVDTAVKTVSKNLGKSVNIGELVFNLTKNIIYRAAFGSSSQEGQDEFISILQEFSKLFGAFNLADFIPYLGWIDPQGINARLVKARGALDRFIDKIIDEHVEKNRKKGHGKVDEESDMVDELLAFYGEEAKLNNESDDLQNSIRLTKENIKAIIMDVMFGGTETVASAIEWAMAELIRNPNELKRVQQELATVVGLDRRVEEADFEKLPYLKCVIKETLRLHPPIPLLLHETAEDATVSGYLVPKGSRVMINAWAIGRDKDSWEDPESFRPSRFLEEGVADFKGSNFEFIPFGSGRRSCPGMQLGLYALELAVAHLLHCFTWELPDGMKPSEMDMSDVFGLTAPLATRLFAVPAKRVTCPL* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0141 517 Pfam Cytochrome P450 40 500 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo01g0141 517 Gene3D Cytochrome P450 32 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo01g0141 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 448 457 IPR017972 GO:0005506|GO:0016705
Amo01g0141 517 Coils Coil 285 305 - -
Amo01g0141 517 SUPERFAMILY Cytochrome P450 40 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo01g0141 517 PANTHER CYTOCHROME P450 FAMILY FERULATE HYDROXYLASE 12 517 - -
Amo01g0141 517 PANTHER CYTOCHROME P450 84A1-RELATED 12 517 - -
Amo01g0141 517 PRINTS E-class P450 group I signature 305 322 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo01g0141 517 PRINTS E-class P450 group I signature 368 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo01g0141 517 PRINTS E-class P450 group I signature 182 200 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo01g0141 517 PRINTS E-class P450 group I signature 445 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo01g0141 517 PRINTS E-class P450 group I signature 325 351 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo01g0141 517 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo01g0141 517 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo01g0141 517 PRINTS E-class P450 group I signature 455 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo01g0141 517 PRINTS E-class P450 group I signature 408 432 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo01g0141 517 PRINTS P450 superfamily signature 369 380 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo01g0141 517 PRINTS P450 superfamily signature 446 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo01g0141 517 PRINTS P450 superfamily signature 455 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Amo01g0141 517 PRINTS P450 superfamily signature 316 333 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0141 Amo-Chr1 2678706 2682968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0141 47 517 Monolignol Biosynthesis Gene Families AT4G36220 77.167 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0141 K09755 - gmx:100783430 833.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g0141 01 2678706 2682968 Amo05g1349 05 19173177 19176931 PCT