Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0133 ATGTTGTCTCAGTTGTGGCCTCCCCATATTCACACAGCCTCCTTTCTCTTGCCTGAGCTTCCCCGGCCTCATCATTTTCTTCTGCTGTCGAGCAATGCATGTAGACGTACTCCTACTTTTCACTTTCGATTAGAAAGTAGAAGACGACCAAGGCCAAGACGAGGCAGCAGCATTTGTTGTTGTTGTGGTTCTGCCTCTGAGTGGGAACTTAAGGAAGCAGGTATAGCCGTGTCAACTTTCCTTCAAGGATTAGGGGTGTCAGAGGAGGAGTCCTTATCCATCGCATCCAAGTCACCCTCTTACTCCAACATGTTGGTGGAGAGTGTCAGGGATTTGGACCAACACTCCATGTGGAATTCCGATTCGGCCTCCTTGGGCTTCAGGGAAAAGCTTCTTCACATTGCGTCCCTCAAAGGTGACAATGGAAAACTCCCTTACTTTGAGAGTCTCGGCTTCACTCTTTCTTCATCTATCGCCCTTGCTAGGTATCTCTCCTCTCAGAACCTCCCATCCCTCATGCACAAGGTTGCATCCATCAAGGATCTCTTCTTTTCTCATCAAGCTGATCACCTCCTCATCAACAACATTCGTCGCATGATGCTCCACCTGTCCATTCCAATCGACGATGATCTACAGCATACTCTCTCCTTCTTTGAGAAGCTTGAAGCCAGGCGTGGAGGCTTAAATGTCTTTCTTTCTGACAAAGACACTGCCTTCCGCCATTTGATTGATTCCTTTCCTCGTTTACTTTCACTCTCACTGGATAACCACATCGTTCCTATTATCGATTTTCTCCACAATATTGGAGTTCCCAGAGTTCACATCACAACCATAATACTCTCTTTTCCGCCTATTCTGTTCTGGAATATTCAACTCCTTAAAGCTAGACTCCTCGCCTTGAAACAGATTCATWTGGTGGATAAAGATTATATCAAGTTGTTGAGCAGATATCCTTGGGTTCTATCTACAAGCATTCAAGAGAACTATGAGGAGGTTCATGGATTTTTTCTTTCTGAGAAGGTTAGAAAGATATGTATTGACTCTGCAATCAGAGGCCAACCATACCTATTGGGTTGTTCAACTGGCAAGCTGAAGTCGATGCTGGATCAGTTGGCTGATCTTGGAGTTAAGGGAAATAAGTTAGATAGGGTTATTGCTAGAAGCCCGCAGCTACTATTGCGGAAGCCCAGAGATTTTCTACAGGTTGTTCTGTTCTTTGAAAATATGGGCTTGGATAGAGAAATTGTTGGGAGAATTCTTTCTCGCTGCCCAGAAATTTTCGCTGCCAGCATCAATAAAACTCTTAAGAGGAAGATTGAATTCCTTTCTGGGGTTGGCGTTTCGGAAGCATATCTTCCTGGGGTAATCAGAAAGTATCCGGAATTACTTGTAACGGACACTGATAAAACCATACTACATCGGCTGATGTACCTGATGAAGTTAGGACTTTCGGAGAAAGAGATTGGGTTTATGGTGCGCACGTTTTCTCCGCTCTTCGGGTACAGTATAGAGGAGGTTCTGAGGCCAAAAATAGAATTCTTAGTGAAGTCGATGAAGAGGCCGGTACGAGAAGTTGTTGATTACCCTCGGTATTTTAGCTATTCATTAGAAAAGAAGATAAAGCCAAGATACTTTGTACTCAAGGGAAGGCATATTGAATGTAGCTTAAAGGATATGCTGGGAAAAAATGATGAGGAATTTGCTGCAGAATTTATGGGTGTGGGTCTTGGAGGGATGCTTGACCCTCCTCTCTCTTCTGAGAATGTGTTGTAA 1773 0.4411 MLSQLWPPHIHTASFLLPELPRPHHFLLLSSNACRRTPTFHFRLESRRRPRPRRGSSICCCCGSASEWELKEAGIAVSTFLQGLGVSEEESLSIASKSPSYSNMLVESVRDLDQHSMWNSDSASLGFREKLLHIASLKGDNGKLPYFESLGFTLSSSIALARYLSSQNLPSLMHKVASIKDLFFSHQADHLLINNIRRMMLHLSIPIDDDLQHTLSFFEKLEARRGGLNVFLSDKDTAFRHLIDSFPRLLSLSLDNHIVPIIDFLHNIGVPRVHITTIILSFPPILFWNIQLLKARLLALKQIHXVDKDYIKLLSRYPWVLSTSIQENYEEVHGFFLSEKVRKICIDSAIRGQPYLLGCSTGKLKSMLDQLADLGVKGNKLDRVIARSPQLLLRKPRDFLQVVLFFENMGLDREIVGRILSRCPEIFAASINKTLKRKIEFLSGVGVSEAYLPGVIRKYPELLVTDTDKTILHRLMYLMKLGLSEKEIGFMVRTFSPLFGYSIEEVLRPKIEFLVKSMKRPVREVVDYPRYFSYSLEKKIKPRYFVLKGRHIECSLKDMLGKNDEEFAAEFMGVGLGGMLDPPLSSENVL* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0133 590 PANTHER TRANSCRIPTION TERMINATION FACTOR 4, MITOCHONDRIAL 42 395 - -
Amo01g0133 590 PANTHER TRANSCRIPTION TERMINATION FACTOR 4, MITOCHONDRIAL 393 574 - -
Amo01g0133 590 SMART mt_12 311 342 IPR003690 GO:0003690|GO:0006355
Amo01g0133 590 SMART mt_12 489 521 IPR003690 GO:0003690|GO:0006355
Amo01g0133 590 SMART mt_12 453 484 IPR003690 GO:0003690|GO:0006355
Amo01g0133 590 SMART mt_12 417 448 IPR003690 GO:0003690|GO:0006355
Amo01g0133 590 SMART mt_12 382 412 IPR003690 GO:0003690|GO:0006355
Amo01g0133 590 SMART mt_12 522 553 IPR003690 GO:0003690|GO:0006355
Amo01g0133 590 SMART mt_12 347 377 IPR003690 GO:0003690|GO:0006355
Amo01g0133 590 SMART mt_12 240 271 IPR003690 GO:0003690|GO:0006355
Amo01g0133 590 PANTHER CGI-12 PROTEIN-RELATED 42 395 IPR003690 GO:0003690|GO:0006355
Amo01g0133 590 PANTHER CGI-12 PROTEIN-RELATED 393 574 IPR003690 GO:0003690|GO:0006355
Amo01g0133 590 Pfam mTERF 262 568 IPR003690 GO:0003690|GO:0006355
Amo01g0133 590 Gene3D Transcription termination factor 3, mitochondrial 345 576 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0133 Amo-Chr1 2544802 2548278 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Amo01g0133 mTERF 9.7e-91 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0133 K15032 - gmx:100802127 681.789