Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0126 ATGGCGGGGTTGTTCTCGTTAGGAGGCGGTGGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAAGAGGTAGCAGTGGAAACCACCAGGACCAGGAACAGCAACACCAGCACCACAGTCAAAACACCGAAATTCCTCCTCCAGAGACCTTATTTTGGTACAAACAAAACGACGACGTTTCAACATACCGCGGTTTCGAGCTATGGAACCAGCATCAGCTTCAGCAGCAACAGCAGCAACATCACGTGATAGCACATCACCATCAAGCCCGCCCTCTCTTCCACCGAGATCTCTACTCGTCGGCTGTTGCCCTTGGCGTGGGGCCCAGCGGCGCGTCCGATGAGCAGTCTCCGTCGAGATCGGCGGTTATGGCGATGCGGTCCGCSGSGGTGGGAGAAGCCGGAGGAGCAGGAAGCGGAACAACCGGAATAAGCTGTCAAGATTGCGGAAACCAGGCGAAGAAAGACTGCCCTCACATGAGGTGCAGGACTTGTTGCAAGAGTCGTGGGTACGACTGCCAGACCCACGTGAAGAGCACGTGGGTCCCAGCCGCTAAGCGCCGCGAGCGGCAACAGCAGTTAGCGGCGCTTCAGGATCACCAGAACAGAGATGCTTCAAAGAGACCTAGAGATGGCGGTAATAGCAACAACCCTTCCACTTCTTCAGCACTTGTTTGCACTACTCGTTTGCCCTCCACTGGGTTAGAGCTTGAGCAAGGAAATTTTCCATCAATAGTGAACTCTCCTGCAGAGTTCAGGTGCGTGAGGGTTAGTCCCTTGGATGATGTGAARGAACAGTACGCTTATCAAACCGCCGTCAACATCGGAGGCCATTTGTTCAAAGGGATTCTCTATGACTACGGTCCGGACAGCGAAAATGCTAGCTACTACGGCGGCGAGGGTTCTTCTTCCGCTATTGCTGGAGGTCAGCCCTTGAACCTCATCACCGGCACTGATTCTGCCACCACCGCAACCGCCACCGCCCCGGGTGTGTCGTCTGCAGAGGCTCTTGATGTTGATCCTTCGTCGTTGTACAATCCAGCTCCAATTAACACATACATGGCTGGTAGTAGCGGTACGCAATTCTTCCCTCATCATCCAAGATCTTGA 1113 0.5463 MAGLFSLGGGGGGGGGGGGGGGGRGSSGNHQDQEQQHQHHSQNTEIPPPETLFWYKQNDDVSTYRGFELWNQHQLQQQQQQHHVIAHHHQARPLFHRDLYSSAVALGVGPSGASDEQSPSRSAVMAMRSAXVGEAGGAGSGTTGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPAAKRRERQQQLAALQDHQNRDASKRPRDGGNSNNPSTSSALVCTTRLPSTGLELEQGNFPSIVNSPAEFRCVRVSPLDDVKEQYAYQTAVNIGGHLFKGILYDYGPDSENASYYGGEGSSSAIAGGQPLNLITGTDSATTATATAPGVSSAEALDVDPSSLYNPAPINTYMAGSSGTQFFPHHPRS* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0126 370 Pfam Domain of unknown function (DUF702) 144 291 - -
Amo01g0126 370 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 367 IPR007818 GO:0003700|GO:0006355
Amo01g0126 370 MobiDBLite consensus disorder prediction 212 226 - -
Amo01g0126 370 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 243 290 IPR006511 -
Amo01g0126 370 PANTHER PROTEIN SHORT INTERNODES 1 367 - -
Amo01g0126 370 MobiDBLite consensus disorder prediction 1 54 - -
Amo01g0126 370 MobiDBLite consensus disorder prediction 185 226 - -
Amo01g0126 370 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 146 188 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0126 Amo-Chr1 2434103 2436370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0126 38 370 C2H2 Transcription Factor Family AT3G51060 47.696 7.91e-83 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Amo01g0126 DUF702 3.9e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0126 - - ahf:112720334 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g0126 01 2434103 2436370 Amo11g0608 11 11148603 11150762 hybridization