Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0118 ATGGGTGAGGAGGTGAAAGCAATTGTTCCCGAGTCTGTGCTTAAGAAGCAGAAYAGGGAGGYGGAATGGGCCTTGAAGAAAAAGGAGGAGCTMAATGCTGSAAAGAAGAAGAGAGCTGAGAGCCGCAAGCTCATTTACAGCAGGGCAAAGCAATATGCAAAGGAATACCAGGAGCAGGAAAAGGAGCTGATCCAATTGAAGCGGGAAGCAAAGCTGAAAGGTGGATTCTATGTTGATCCAGAGGCTAAACTCCTGTTTATCATCCGCATCCGTGGTATCAATGCCATGGACCCCAAGTCAAGAAAGATCTTGCAGTTGTTGAGGTTGAGACAGATCTTCAATGGTGTGTTCCTCAAGGTTAATAAGGCCACAATGAACATGCTTCACAGGGTTGAACCATATGTGACCTATGGATACCCAAATTTGAAGAGTGTAAAAGAGCTTATTTACAAGAGGGGCTTTGGTAAGTTGAACAAGCAGAGAATTGCCCTAACCGACAACTCGATCATTGAGAAGGCACTGGGCGAACATGGAATCATCTGCATCGAAGATCTTATCCATGAGATCATAACAGTTGGACCCCATTTCAAGGAAGCAAACAACTTCCTTTGGCCATTTAAGCTCAAGGCTCCATTGGGTGGCTTGAAGAAGAGGAACCACTATGTTGAAGGAGGAGATGCCGGAAACAGGGAGAACTACATCAATGAGCTTATCAGGAGAATGAATTAG 729 0.4486 MGEEVKAIVPESVLKKQNREXEWALKKKEELNAXKKKRAESRKLIYSRAKQYAKEYQEQEKELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKSRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVKELIYKRGFGKLNKQRIALTDNSIIEKALGEHGIICIEDLIHEIITVGPHFKEANNFLWPFKLKAPLGGLKKRNHYVEGGDAGNRENYINELIRRMN* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0118 242 Coils Coil 14 20 - -
Amo01g0118 242 CDD Ribosomal_L7_archeal_euk 84 242 IPR035808 -
Amo01g0118 242 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 5 242 - -
Amo01g0118 242 Pfam Ribosomal protein L30p/L7e 85 135 IPR016082 -
Amo01g0118 242 TIGRFAM uL30_euk: 60S ribosomal protein uL30 10 242 IPR005998 GO:0000463|GO:0003735|GO:0022625
Amo01g0118 242 Coils Coil 22 33 - -
Amo01g0118 242 Coils Coil 49 73 - -
Amo01g0118 242 ProSitePatterns Ribosomal protein L30 signature. 103 135 IPR018038 -
Amo01g0118 242 PANTHER 60S RIBOSOMAL PROTEIN L7 5 242 IPR039699 -
Amo01g0118 242 Gene3D - 84 188 IPR036919 -
Amo01g0118 242 Gene3D - 189 242 IPR036919 -
Amo01g0118 242 SUPERFAMILY Ribosomal protein L30p/L7e 84 242 IPR036919 -
Amo01g0118 242 Pfam Ribosomal L30 N-terminal domain 9 80 IPR012988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0118 Amo-Chr1 2316462 2320392 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0118 4 242 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 84.583 2.63e-152 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0118 K02937 - csv:101215283 401.364