Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0116 ATGGGGGGCAACTTGGTCATTGCATACATTATTTTATCCTTTTATCCTCTTTTCATTATTGTGCATGGCACTGATAATAAGTTATCATGCAATCAAACTCCATATCCCACTCTATGTAACCATTACATTATTGGCACTACCAATTATTCAATTTCCTCTTCTTATTATTCCTTCCATGACATGGCCCTTAAGGTCACCATGGACCAAGCAATAGTAGCACACAAACTTGTCTCATCAACCATGGAATCCAACCATTTCAAAGACAAGAGAGCCAAGTCCGCATGGGAAGATTGTTTGGAACTCTATGAGAATACAATCTATCAGCTCAACCGTTCAATGAGCTCAAACAATCTAAACGACAAGTTAACATGGCAAAGTGCTTCTATTGCCAATCAACAAACATGCCAAAACGGTTTTCTTGATTCTAACCTTTCATCTCACTACCTAAACTACTTTCCATCCATTTCAACCAACTTATCCAACTTGCTCAGCAACTCTTTGGCCATTACCAATACATTAACGTCCTTCACTTCGTTACCAAAACACCCGGTTGCTCGCGGCGGTCGAAAATTGCTTTCTTTTAATGGCTTCCCAGAGTGGCTATCTCCTTCCGACAGGAGGCTTCTTCAGGCTTTGCCGGGAACGGCGGCACCGAAGGCGGACATTGTGGTGGCACAGGACGGGAGTGGGAATTACAAGAGTGTTTCGGAGGGCGTGGCGGCGGCCGGTAGGGTGAATAAGAATGCGGTGTCGAGTGATGGGTTCATCGCTAGGGACTTAACAATTGAGAACAGTGCTGGGCCACAGAAGCACCAAGCGGTGGCACTTCTTTCCAGCTCCGATCACTCCGTCTTCTACCGCTGTAGCTTCAGAGGCTACCAAGACACCTTATACGTCCTTTCCCAACGCCAATTCTACCGCGACTGCGACATCTACGGCACCATAGATTTCATCTTCGGTGACGCCGTCGCCCTCTTCCAAAACTGCAACATCTTCTTGAGAAAACCAATGACTAAGCAACAGAACGCAGTCACAGCACAAGGGAGAACCGATCCCAACGAGAACACCGGCATTGTCATCCACAACTGCCGTATCATGGCGGCTTCAGATCTGAAGCCAGTTCAGGGATCTGTGAAGTGCTTCCTCGGGCGGCCGTGGCAGAAGTACTCAAGAACGGTGGTGGTGAAGAGTAGCCTGGACGGTTTGATTGAAGCGGCAGGGTGGATGCCATGGGCGGGAAGCTTTGCCTTGAATACATTGTATTATGGAGAGTATATGAATATTGGAGCTGGTGCTAACACTGCAGGCAGGGTTAAATGGCCTGGCTTTCATGTTATTACCAACCCTTCTGAGGCTTTGAAATTTACTGTTGCTAATTTCTTGGATGGTGGATCCTGGATTCCTGGCACTGGTGTTCCCTTTGAAACTGGCCTTTGA 1437 0.4711 MGGNLVIAYIILSFYPLFIIVHGTDNKLSCNQTPYPTLCNHYIIGTTNYSISSSYYSFHDMALKVTMDQAIVAHKLVSSTMESNHFKDKRAKSAWEDCLELYENTIYQLNRSMSSNNLNDKLTWQSASIANQQTCQNGFLDSNLSSHYLNYFPSISTNLSNLLSNSLAITNTLTSFTSLPKHPVARGGRKLLSFNGFPEWLSPSDRRLLQALPGTAAPKADIVVAQDGSGNYKSVSEGVAAAGRVNKNAVSSDGFIARDLTIENSAGPQKHQAVALLSSSDHSVFYRCSFRGYQDTLYVLSQRQFYRDCDIYGTIDFIFGDAVALFQNCNIFLRKPMTKQQNAVTAQGRTDPNENTGIVIHNCRIMAASDLKPVQGSVKCFLGRPWQKYSRTVVVKSSLDGLIEAAGWMPWAGSFALNTLYYGEYMNIGAGANTAGRVKWPGFHVITNPSEALKFTVANFLDGGSWIPGTGVPFETGL* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0116 478 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 174 IPR006501 GO:0004857
Amo01g0116 478 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 249 477 - -
Amo01g0116 478 CDD PMEI-like_3 28 145 - -
Amo01g0116 478 ProSitePatterns Pectinesterase signature 2. 311 320 IPR033131 -
Amo01g0116 478 PANTHER PECTINESTERASE 21 245 - -
Amo01g0116 478 Pfam Pectinesterase 249 463 IPR000070 GO:0030599|GO:0042545
Amo01g0116 478 Pfam Plant invertase/pectin methylesterase inhibitor 29 169 IPR006501 GO:0004857
Amo01g0116 478 PANTHER PECTINESTERASE 249 477 - -
Amo01g0116 478 SMART PMEI_2 21 169 IPR006501 GO:0004857
Amo01g0116 478 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 174 IPR035513 -
Amo01g0116 478 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 174 IPR035513 -
Amo01g0116 478 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 21 245 - -
Amo01g0116 478 Gene3D - 245 478 IPR012334 -
Amo01g0116 478 SUPERFAMILY Pectin lyase-like 215 476 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0116 Amo-Chr1 2296981 2299387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0116 29 478 Carbohydrate Esterase AT1G23200 46.792 7.82e-153 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0116 - - aip:107646806 881.708