Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0095 ATGAATTCAACTAAATATTTATTACCTAGCTACTTTTTTAATCTATACATTCTAATATGTAAGACAAGAATGCTATTTAAAAATAATTGTTGCCTTATTATTGGTCATTTCATTTTCATAATGGGGGGCAACTTGGTCATTGCATACATTATTTTATCCTTTTATCCTCTTTTCATTATTGTGCATGGCACTGATAATAAGTTATCATGCAATCAAACTCCATATCCCACTCTATGTAACCATTACATTATTGGCACTACCAATTATTCAATTTCCTCTTCTTATTATTCCTTCCATGACATGGCCCTTAAGGTCACCATGGACCAAGCAATAGTAGCACACAAACTTGTCTCATCAACCATGGAATCCAACCATTTCAAAGACAAGAGAGCCAAGTCCGCATGGGAAGATTGTTTGGAACTCTATGAGAATACAATCTATCAGCTCAACCGTTCAATGAGCTCAAACAATCTAAACGACAAGTTAACATGGCAAAGTGCTTCTATTGCCAATCAACAAACATGCCAAAACGGTTTTCTTGATTCTAACCTTTCATCTCACTACCTAAACTACTTTCCATCCATTTCAACCAACTTATCCAACTTGCTCAGCAACTCTTTGGCCATTACCAATACATTAACGTCCTTCACTTCGTTACCAAAACACCCGGTTGCTCGCGGCGGTCGAAAATTGCTTTCTTTTAATGGCTTCCCAGAGTGGCTATCTCCTTCCGACAGGAGGCTTCTTCAGGCTTTGCCGGGAACGGCGGCACCGAAGGCGGACATTGTGGTGGCACAGGACGGGAGTGGGAATTACAAGAGTGTTTCGGAGGGCGTGGCGGCGGCCGGTAGGGTGAATAAGAATGGTCGAGTAAATTTTATTAAACACTACCAGTTTCTTCATGATGGGTTCATCGCCAGGGACCTGACAATTGAGAACAGTGCTGGCCCACAGAAGCACCAAGCAGTGGCACTTCTTTCCAGCTCCGATCACTCCGTCTTCTACCGCTGTAGCTTCAAGGGCTACCAAGACACCTTATACGTCCTTTCCCAACGCCAATTCTACCGCGACTGCGACATCTACGGCACCATAGATTTCATCTTCGGTGACGCCGTCGCCCTCTTCCAAAACTGCAACATCTTCTTGAGAAAACCAATGACTAAGCAACAGAACGCAGTCACAGCACAAGGGAGAACCGATCCCAACGAGAACACCGGCATTGTCATCCACAACTGCCGTATCATGGCGGCTTCAGATCTGAAGCCAGTTCAGGGATCTGTGAAGTGCTTCCTCGGGCGGCCGTGGCAGAAGTACTCAAGAACGGTGGTGGTGAAGAGTAGCCTGGACGGTTTGATTGAAGCGGCAGGGTGGATGCCATGGGCGGGAAGCTTTGCCTTGAATACATTGTATTATGGAGAGTATATGAATATTGGAGCTGGTGCTAACACTGCAGGCAGGGTTAAATGGCCTGGCTTTCATGTTATTACCAACCCTTCTGAGGCTTTGAAATTTACTGTTGCTAATTTCTTGGATGGTGGATCCTGGATTCCTGGCACTGGTGTTCCCTTTGAAACTGGCCTTTGA 1584 0.4476 MNSTKYLLPSYFFNLYILICKTRMLFKNNCCLIIGHFIFIMGGNLVIAYIILSFYPLFIIVHGTDNKLSCNQTPYPTLCNHYIIGTTNYSISSSYYSFHDMALKVTMDQAIVAHKLVSSTMESNHFKDKRAKSAWEDCLELYENTIYQLNRSMSSNNLNDKLTWQSASIANQQTCQNGFLDSNLSSHYLNYFPSISTNLSNLLSNSLAITNTLTSFTSLPKHPVARGGRKLLSFNGFPEWLSPSDRRLLQALPGTAAPKADIVVAQDGSGNYKSVSEGVAAAGRVNKNGRVNFIKHYQFLHDGFIARDLTIENSAGPQKHQAVALLSSSDHSVFYRCSFKGYQDTLYVLSQRQFYRDCDIYGTIDFIFGDAVALFQNCNIFLRKPMTKQQNAVTAQGRTDPNENTGIVIHNCRIMAASDLKPVQGSVKCFLGRPWQKYSRTVVVKSSLDGLIEAAGWMPWAGSFALNTLYYGEYMNIGAGANTAGRVKWPGFHVITNPSEALKFTVANFLDGGSWIPGTGVPFETGL* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0095 527 Pfam Plant invertase/pectin methylesterase inhibitor 69 209 IPR006501 GO:0004857
Amo01g0095 527 SMART PMEI_2 61 209 IPR006501 GO:0004857
Amo01g0095 527 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 302 526 - -
Amo01g0095 527 Gene3D - 296 527 IPR012334 -
Amo01g0095 527 Pfam Pectinesterase 302 512 IPR000070 GO:0030599|GO:0042545
Amo01g0095 527 CDD PMEI-like_3 68 185 - -
Amo01g0095 527 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 214 IPR035513 -
Amo01g0095 527 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 214 IPR035513 -
Amo01g0095 527 SUPERFAMILY Pectin lyase-like 255 525 IPR011050 -
Amo01g0095 527 ProSitePatterns Pectinesterase signature 2. 360 369 IPR033131 -
Amo01g0095 527 PANTHER PECTINESTERASE 60 291 - -
Amo01g0095 527 PANTHER PECTINESTERASE 302 526 - -
Amo01g0095 527 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 60 291 - -
Amo01g0095 527 TIGRFAM PME_inhib: pectinesterase inhibitor domain 49 214 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0095 Amo-Chr1 2061103 2063972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0095 69 527 Carbohydrate Esterase AT1G23200 46.981 1.01e-151 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0095 - - aip:107646806 887.1