Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0080 ATGGGAATAGCAACACCGCCACCAATTCCTTCCATTCTCTCTCACTCAAAGACTAATAACTACCAGCAGCACCATTCTTTCACCATAATCGAGAAGCCTGAAGAAGAAGAAGAAGAAGGATTAAACGCTTCTAATTCTATGTCCCAAGATTACCACCACCACAATCAAGGAATCTTCACCTTCTCCAATAATGGGTTCGAGAGATCCACACAGGTAACAAACCAAGAACACCATCACCAACATCAACACCACTTGGCTCAGCAAATTCGGAGGGACAAAGTGAGGGTGCAAGGCTTCGATCCACAGCAACCGCCTCCGGCACAGCCACCAACAGCCATAATTGGAATAGAAGAATCCGGAGGCATCCCGGGGTACGAAACTGCCGGGATGCTATCGGAGATGTTCAATTTCCCGCCGGTTGTAGATGCTGCGGCCGGGGAATTATTGGAGCAGCCAATGATAGCGACGTTTCGTTCCCCAACGACGACGAGGTCATTGGGTAGCGATTGGTATGGTGGAAACAGACAAGGGATGATAACCGGGTTGGGAGCGTTGGGAGATAATTCAAAGAATAATCATAATCAACATGATCAAAGTAATTTGAACAACGGTGGTGTCATAGTTCATCATCAACATGATAATCAGATTCCTAGCATTAATGCCGATTCAGCTGCAGCCATGCAACTTTTCCTCATGAACCCACAAACCACAACCAGATCACCTTCCCCTCCGTCCCATCACACCACACCCACTCCTCCTTCGTCTTCTTCGACGCTTCACATGCTTCTTCCTAATCCTAATCCCAATACTTCCCTACAAGGCTTCCATGGTGGTGGTGGTGGTACCTTCAACCAAATCACATGGGCCCCTGACAGTGCTCAAGAAGCTCAAGGCCTCTCTTTATCCTTATCCTCTTCGTTACAGCACCTGGAAGCCGCGAAAGCCGAGGAATTGAGGATGGGAGAAAGTGGTTTCCTCTTTTACAACCAAGGAGTTGGTGGTGGTCCTTCATCTTCCTCTTCTTCTGCTCAGTATCCTTACAAGAATCTCCCTGGCCATCACCAACAACACCAAGCATTGCATATTCAAGGACCCATTGGGTTTGGATCATCATCTTCGTCTTTGGGTCTAGTCAACGTCCTCAGGAATTCCAAGTATGTCAAGGCCGCTCAGGAGTTGCTTGAAGAGTTCTGCAGCGTTGGGAGGGGTCAGTTCAAGAAAAACAAGTTCACTAGGCAGCTCTCAAACCCTAGCTCCAATCAAGGTGGCGCCGCCGCCGCTTCTTCATCTTCGTCAAAGGAACTTCCTCCTTTGTCAGCTTCTGATAGGATCGAGCATCAAAGGCGGAAGGTCAAGCTTCTCACCATGCTTGATGAGGTGGACCGTAGGTACAGTCACTACTGCGAGCAAATGCACATGGTGGTGAACTCGTTCGACCTGGTGATGGGGTACGGGGCGGCGGTACCGTACACGGCGCTGGCGCAGAAGGCGATGTCGCGGCACTTCCGGTGCCTGAAGGATGCAATAACGACGCAGTTGAAACACAGCTGCGAGGTACTTGGAGAGAAGGAAGGGGTGGGGACGACGGGGCTGACGAAGGGGGAGACGCCGCGGCTGAAGATGCTGGAGCAGAGCTTGAGGCAGCAGAGGGCGTTCCACCAAATGGGGATGATAGAGCAGGAGGCTTGGAGACCCCAAAGAGGCTTGCCTGAACGATCTGTCAACATTTTGAGAGCCTGGCTCTTCGAGCATTTTCTTCACCCGTACCCAAGCGATGCAGATAAGCATCTCTTAGCAAGACAGACTGGGTTATCAAGAAATCAGGTATCAAACTGGTTTATTAACGCCAGGGTTCGTTTGTGGAAACCCATGGTTGAAGACATGTACCAACAAGAACTCAAAGATGCAGAGGGTGCAACAGAAGAAGAAGACGACGAAGGAGAAAGCAACAACAATAGTGGCAATCATGTACAAACTCCACTGCCACCATCATCAACAACTACAACACCACCACCACTTCAATTATCATCGTCAACACCAACAAGTAATAATAACAACAATGTTAATAAAAGATCAGATATTATCATCAATGCCCAAGATAGTGACCCTTCATTAGCAGCAATTAATAGACAAGGCTTAGAAATTCAAGCAAAGCAGCCAGCTACAAGTTCCACCGCCAACACCACCGTCACCCCACCTGTAGTGTCACAGTGTTTTGACTCAGAGCAGCTACTAAATGAGGATACGTGTGGCCACGGAAGCATAGTGAGTGCAGAATATGGAAGTGTTGCTGCAATGACTGAGATAGGGTCTTCTTCAAGTACTCTCATCAGGTTTGGGACAACAGCTGCACCCGGCGATGTGTCACTCACGCTGGGGCTACGACACACTGGGAACAACTCCTTTCTCCATTAG 2415 0.4903 MGIATPPPIPSILSHSKTNNYQQHHSFTIIEKPEEEEEEGLNASNSMSQDYHHHNQGIFTFSNNGFERSTQVTNQEHHHQHQHHLAQQIRRDKVRVQGFDPQQPPPAQPPTAIIGIEESGGIPGYETAGMLSEMFNFPPVVDAAAGELLEQPMIATFRSPTTTRSLGSDWYGGNRQGMITGLGALGDNSKNNHNQHDQSNLNNGGVIVHHQHDNQIPSINADSAAAMQLFLMNPQTTTRSPSPPSHHTTPTPPSSSSTLHMLLPNPNPNTSLQGFHGGGGGTFNQITWAPDSAQEAQGLSLSLSSSLQHLEAAKAEELRMGESGFLFYNQGVGGGPSSSSSSAQYPYKNLPGHHQQHQALHIQGPIGFGSSSSSLGLVNVLRNSKYVKAAQELLEEFCSVGRGQFKKNKFTRQLSNPSSNQGGAAAASSSSSKELPPLSASDRIEHQRRKVKLLTMLDEVDRRYSHYCEQMHMVVNSFDLVMGYGAAVPYTALAQKAMSRHFRCLKDAITTQLKHSCEVLGEKEGVGTTGLTKGETPRLKMLEQSLRQQRAFHQMGMIEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKDAEGATEEEDDEGESNNNSGNHVQTPLPPSSTTTTPPPLQLSSSTPTSNNNNNVNKRSDIIINAQDSDPSLAAINRQGLEIQAKQPATSSTANTTVTPPVVSQCFDSEQLLNEDTCGHGSIVSAEYGSVAAMTEIGSSSSTLIRFGTTAAPGDVSLTLGLRHTGNNSFLH* 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0080 804 ProSiteProfiles 'Homeobox' domain profile. 560 623 IPR001356 GO:0003677
Amo01g0080 804 MobiDBLite consensus disorder prediction 251 278 - -
Amo01g0080 804 MobiDBLite consensus disorder prediction 633 689 - -
Amo01g0080 804 SMART prehox3 375 511 IPR006563 -
Amo01g0080 804 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 114 800 - -
Amo01g0080 804 MobiDBLite consensus disorder prediction 70 120 - -
Amo01g0080 804 SMART HOX_1 563 627 IPR001356 GO:0003677
Amo01g0080 804 MobiDBLite consensus disorder prediction 412 437 - -
Amo01g0080 804 MobiDBLite consensus disorder prediction 1 23 - -
Amo01g0080 804 MobiDBLite consensus disorder prediction 412 442 - -
Amo01g0080 804 MobiDBLite consensus disorder prediction 670 689 - -
Amo01g0080 804 Pfam Associated with HOX 380 510 IPR006563 -
Amo01g0080 804 Pfam Homeobox KN domain 580 619 IPR008422 GO:0003677|GO:0006355
Amo01g0080 804 Gene3D - 566 628 - -
Amo01g0080 804 MobiDBLite consensus disorder prediction 235 278 - -
Amo01g0080 804 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 114 800 - -
Amo01g0080 804 CDD homeodomain 563 624 IPR001356 GO:0003677
Amo01g0080 804 MobiDBLite consensus disorder prediction 72 97 - -
Amo01g0080 804 SUPERFAMILY Homeodomain-like 565 630 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0080 Amo-Chr1 1798117 1811219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0080 44 610 Homeobox Transcription Factor Family AT4G36870 48.558 6.75e-141 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Amo01g0080 POX 4.5e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0080 - - tcc:18611010 802.357