Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0079 ATGGGTTGGTTTACCAAGCTGCTTAAGGGATCCAACCATAAATCTTCGAGAGGAAAATATCATGGGAAACATGAAAATTCCATGGTAATAACAGTTTCCACTAAGTCCATTTTTAATGAAATCTATTGTCATTATTGTAGTTATTTATCTGCTTTTAGCAAGAGAGATGATTTGACAGATGTTGAGAGAGAAGAAATTGATCGTGCAATTGCACTCTCTCTTTCGGAGGAAGATCCGAAAGGGAAAAAAGTTATTGAGGACGACCCTCAATCTTCTGATGATGAACAACTCTGTGAACTTACTGATGAAGATGAATATCATGGTGAAGTTGAACAACATGAAGAATTAAGTAATCATCACAAAGAGGAAGATGAATCTGTTGGTGAAGTTGAGGAAGAGGAAGATGACCATCTTAATAACATTCAACAGGATAATGACAAGCATCTTGCAGAAGCGCAGCTTGAGGAAGATGAACAACTTGCCAGAGCACTTCAAGAAAGTTTGAACATTGATTCAGACAGAGCTGAAAGAGATTCTTTATTTCAACCATTTCCACACCTCCTTCGACCTGTATACAGAACCTGTGCTGGCTGCAATTCAGAGATTGGCCATGGCAGATTTTTGAGTTGCATGGGAGGTGTCTGGCATCCAGAATGTTTCTGTTGCCATGCTTGTAATTTGCCAATCACTGATTATGAGTTTTCCATGTCTGGAAATCGTCGTTACCATAAATCTTGCTACAAGGAGCTGCATCACCCAAGATGTGATGTTTGCAAGAACTTCATCCCACCAAATTCAGCTGGACTCATTGAGTATAGAGCACATCCTTTCTGGATGCAGAAATACTGTCCTTCACATGAGCGTGATGGAACTCCTCGTTGTTGTAGCTGCGAAAGAATGGAGTCAAGGGATACAAAGTATCTTTTGCTCGATGACGGTCGAAAGTTGTGCCTAGAGTGTCTAGACTCGGCTATTATGGATACGCATGAATGCCAGCCTCTCTATCTTGAAATACAAGAATTCTATGAAGGTTTAAATATGAAAATAGAACAGCAAGTTCCAATGCTTTTAGTTGAGAGACAAGCACTCAACGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCGGAAACAAGAGGACTTTGCTTGTCGGAAGAGCAAACTGTCGCCACTATTTTAAGGAGACCAAGGATAGGGGCAGGATACCGAGTCATAGATATGATAACTGAGCCTTACAGGCTAATCCGCCATTGCGAAGTGACAGCCATACTTGTTTTGTATGGCCTCCCTAGGTCTTCTTCCAATCCCATCCATTTTCACAGTCTATAA 1335 0.4112 MGWFTKLLKGSNHKSSRGKYHGKHENSMVITVSTKSIFNEIYCHYCSYLSAFSKRDDLTDVEREEIDRAIALSLSEEDPKGKKVIEDDPQSSDDEQLCELTDEDEYHGEVEQHEELSNHHKEEDESVGEVEEEEDDHLNNIQQDNDKHLAEAQLEEDEQLARALQESLNIDSDRAERDSLFQPFPHLLRPVYRTCAGCNSEIGHGRFLSCMGGVWHPECFCCHACNLPITDYEFSMSGNRRYHKSCYKELHHPRCDVCKNFIPPNSAGLIEYRAHPFWMQKYCPSHERDGTPRCCSCERMESRDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKIEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVATILRRPRIGAGYRVIDMITEPYRLIRHCEVTAILVLYGLPRSSSNPIHFHSL* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0079 444 Gene3D Cysteine Rich Protein 191 252 - -
Amo01g0079 444 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 280 - -
Amo01g0079 444 SMART uim 155 174 IPR003903 -
Amo01g0079 444 SMART uim 61 80 IPR003903 -
Amo01g0079 444 ProSiteProfiles LIM domain profile. 193 253 IPR001781 -
Amo01g0079 444 SMART lim_4 194 246 IPR001781 -
Amo01g0079 444 Coils Coil 138 167 - -
Amo01g0079 444 MobiDBLite consensus disorder prediction 107 126 - -
Amo01g0079 444 Pfam LIM domain 195 249 IPR001781 -
Amo01g0079 444 ProSitePatterns LIM zinc-binding domain signature. 195 229 IPR001781 -
Amo01g0079 444 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 155 174 IPR003903 -
Amo01g0079 444 PANTHER PROTEIN DA1-RELATED 2 114 440 IPR045218 -
Amo01g0079 444 MobiDBLite consensus disorder prediction 107 136 - -
Amo01g0079 444 Pfam Protein DA1 344 440 IPR022087 -
Amo01g0079 444 PANTHER PROTEIN DA1-RELATED 2 1 115 IPR045218 -
Amo01g0079 444 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 115 - -
Amo01g0079 444 CDD LIM_DA1 195 247 - -
Amo01g0079 444 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 114 440 - -
Amo01g0079 444 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 191 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0079 Amo-Chr1 1782010 1786086 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo01g0079 DA1-like 1.7e-41 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0079 - - gmx:100806605 665.611