Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0074 ACTGATCTATTTCCTGTCTCTCCCAATTCCCGACTTCATTGTCTCTTCTTATCTCTGCCTGAATTCCTGAAACCATCAGATTCCACTGGGTGCGTTCTGAGGAGGGACATTCCATGGGAGACGTACATGTCTACCAAGCTCATCTCTGGCACAAGCCTTCAGCTCTTAAGGCGTTATGATCACCGATCAGAGAGTCACAGAGCACAGTTGCTCGATGATGATGGTCCGGCTTATGTTCGCGTGTTTGTTCATGTCTTGCGTGATATTTTCAAAGAAGATACTGTAGAATATGTTTTGGCTCTAATTGATGAGATGCTGGCTGCGAACCCGAAAAGAGCAAGATTGTTTCATGATAGCTCCCTTTCAGATGAAGATACCTATGAGCCTTTCTTAACATCCCGCATTAACGTAGAGTCCGGGAAAAGGTCGCATTCAAAAGGTGTCATGTTGCTTTGGAAAGGAAACTGGTTCATACAAGAGAAAAGTTGTAAGATCCTTGCTTTGATAGTTAGTGCCAGGCCTAAAAATCAGAATGGTGTTGTTTCAAATGGAGATACATCAAAGAAACCCTTCACCACTATTGATGATGTTTTGAGAGCATTGGTAAAATGGCTTTGTGAACAGCTCAAGAAGCCATCTCATCCCAATCGTGGAGTCCCAACTGCTGTCAATTGCTTAGCAACTCTGCTTAAGGAACATCTGGTTAGGTCTTCCTTTGTTCAAGCAGATGGAGTGAAGTTGCTTGTGCCATTGATTTCACCAGCATCCACCCAACAATCTATTCAGATTCTGTATGAAGCATGTCTCTGCATATGGCTGCTATCCTATTATGATCCGGCAATTGAATATTTGGCTACTTCGAGGGCCCTTCCACGACTTATTGACGTTGTTAAGACTTCTACAAAAGAGAAGGTAGTTAGAGTAGTGGTCTTGACTCTTAGAAACTTGCTGTCAAAAGGGAGTTTGGGTGCTCAGATGGTTGACTTTCAGCTGCCACAAGTTGTTCAGAGTTTAAAAGCTCAAGCTTGGAGTGATGAGGACCTGCTGGAGGCATTGAATTCTCTTGAAGAAGGGCTAAAAGATAACATTAAGAAACTTAGTTCTTTTGATAAGTACAAGCAAGAAGTCCTGCTTGGTCATCTGGATTGGTCCCCGATGCACAAAGATCCATTGTTTTGGCGAGAAAATATTAATCACTTTGAAGAAAATGACTTCCAGATTCTAAGGGTCCTAGTTACAATTCTTGATACGTCCAGTGATCCAAGAACTCTGGCTGTTGCTTGCTTTGACATTTCACAGTTCATCCAGCACCATCCTTCTGGTCGGATCATTGTGGCGGACCTTAAAGCCAAGGAACGAGTAATGAAACTAATGAATCATGAGAATACCGAGGTTACTAAAAATGCACTGCTCTGCATCCAACGGCTTTTCTTAGGGGCAAAGTATGCAAGCTTTTTGCAAGCCTAG 1467 0.4281 TDLFPVSPNSRLHCLFLSLPEFLKPSDSTGCVLRRDIPWETYMSTKLISGTSLQLLRRYDHRSESHRAQLLDDDGPAYVRVFVHVLRDIFKEDTVEYVLALIDEMLAANPKRARLFHDSSLSDEDTYEPFLTSRINVESGKRSHSKGVMLLWKGNWFIQEKSCKILALIVSARPKNQNGVVSNGDTSKKPFTTIDDVLRALVKWLCEQLKKPSHPNRGVPTAVNCLATLLKEHLVRSSFVQADGVKLLVPLISPASTQQSIQILYEACLCIWLLSYYDPAIEYLATSRALPRLIDVVKTSTKEKVVRVVVLTLRNLLSKGSLGAQMVDFQLPQVVQSLKAQAWSDEDLLEALNSLEEGLKDNIKKLSSFDKYKQEVLLGHLDWSPMHKDPLFWRENINHFEENDFQILRVLVTILDTSSDPRTLAVACFDISQFIQHHPSGRIIVADLKAKERVMKLMNHENTEVTKNALLCIQRLFLGAKYASFLQA* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0074 488 Pfam V-ATPase subunit H 365 477 IPR011987 GO:0000221|GO:1902600
Amo01g0074 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 29 488 - -
Amo01g0074 488 PIRSF V-ATP_synth_H 26 487 IPR004908 GO:0000221|GO:0046961|GO:1902600
Amo01g0074 488 SMART arm_5 277 318 IPR000225 GO:0005515
Amo01g0074 488 SMART arm_5 231 276 IPR000225 GO:0005515
Amo01g0074 488 SMART arm_5 438 478 IPR000225 GO:0005515
Amo01g0074 488 Gene3D - 379 480 IPR038497 -
Amo01g0074 488 SUPERFAMILY ARM repeat 29 478 IPR016024 -
Amo01g0074 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 29 488 IPR004908 GO:0000221|GO:0046961|GO:1902600
Amo01g0074 488 Gene3D - 26 367 IPR011989 -
Amo01g0074 488 Pfam V-ATPase subunit H 32 359 IPR004908 GO:0000221|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0074 Amo-Chr1 1722270 1729342 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0074 32 488 Primary Pumps ATPases(2) AT3G42050 75.930 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0074 K02144 - gmx:100796479 771.541